RXN0-4261

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus siliculosus results to a Genome scale Model containing 1992 reactions, 2146 metabolites, 2290 genes and 1103 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Creation of a metabolic network containing 1661 reactions
• Based on orthology data:
  • Creation of a global metabolic network containing 440 reactions
    • From template aragem creation of a metabolic network containing: 440 reactions
• Based on gap-filling:
  • • 85 reaction(s) added
• Based on expertise:
  • 80 reaction(s) added

• List of tools used:
  • Tool: PathwayTools
  • Tool: Pantograph
  • Tool: Meneco

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme[at]inria.fr