Difference between revisions of "Workflow"

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(Created page with "Category:reaction == Reaction RXN-9623 == * direction: ** left-to-right * common-name: ** long chain acyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1...")
(Created page with "=Workflow command history= ==Command sequence== ==Downloads== You can download the command log file here")
 
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[[Category:reaction]]
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=Workflow command history=
== Reaction RXN-9623 ==
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* direction:
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==Command sequence==
** left-to-right
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==Downloads==
* common-name:
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You can download the [[MEDIA:log.txt|command log file here]]
** long chain acyl-coa synthetase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PALMITATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[Ec-12_008720]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
* Gene: [[Ec-01_001560]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[Ec-02_006430]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[Ec-03_003710]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
* [[PWY-5972]], stearate biosynthesis I (animals):
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
 
** '''28''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
* METANETX-RXN : MNXR99153
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=long chain acyl-coa synthetase}}
 
{{#set: ec-number=ec-6.2.1.3}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
 

Latest revision as of 09:01, 18 March 2021

Workflow command history

Command sequence

Downloads

You can download the command log file here