Difference between revisions of "ExchangeSeed CPD-315"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-13416 == * direction: ** left-to-right * common-name: ** deoxyhypusine synthase == Reaction formula == * 1 EIF5A-LYSINE[c] '''+''' 1...")
(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase, partial ** ureohydrolase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13416 ==
+
== Reaction AGMATIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** deoxyhypusine synthase
+
** agmatinase, partial
 +
** ureohydrolase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[EIF5A-LYSINE]][c] '''+''' 1 [[N-4-aminobutylidene-enzyme-lysine]][c] '''=>''' 1 [[Deoxyhypusine-Synthase-Lysine]][c] '''+''' 1 [[N-4-aminobutylidene-eIF5A-lysine]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-27_002000]]
+
* Gene: [[Ec-17_004300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-22_003700]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-17_004310]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5905]], hypusine biosynthesis:
+
* [[PWY-40]], putrescine biosynthesis I:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 +
** '''3''' reactions found over '''n.a''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P60654 P60654]
 +
** [http://www.uniprot.org/uniprot/P60653 P60653]
 +
** [http://www.uniprot.org/uniprot/P60651 P60651]
 +
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=deoxyhypusine synthase}}
+
{{#set: common-name=ureohydrolase|agmatinase, partial}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 12:12, 12 January 2021

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase, partial
    • ureohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-40, putrescine biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6305, superpathway of putrescine biosynthesis:
    • 3 reactions found over n.a reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esilgem/index.php?title=ExchangeSeed_CPD-315&oldid=20699"