Difference between revisions of "RXN-9222"

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(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] *...")
(Created page with "Category:reaction == Reaction RXN-9527 == * direction: ** left-to-right * common-name: ** 3-oxo-decanoyl-[acyl-carrier protein] synthase ** beta-ketoacyl synthase, n-termi...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6PGLUCONDEHYDROG-RXN ==
+
== Reaction RXN-9527 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
+
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
−
** phosphogluconate dehydrogenase (decarboxylating)
+
** beta-ketoacyl synthase, n-terminal
 +
** thiolase-like, subgroup
 +
** beta-ketoacyl synthase, partial
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
−
* synonymous:
 
−
** 6pgd
 
−
** phosphogluconic acid dehydrogenase
 
−
** 6-phosphogluconic dehydrogenase
 
−
** 6-phosphogluconic carboxylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
+
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-01_008450]]
+
* Gene: [[Ec-27_003480]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-12_000650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[Ec-12_007690]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[Ec-12_000640]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-27_002090]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation:
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
−
** '''13''' reactions found over '''18''' reactions in the full pathway
+
** '''28''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P14332 P14332]
 
−
** [http://www.uniprot.org/uniprot/P31072 P31072]
 
−
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
 
−
** [http://www.uniprot.org/uniprot/P47506 P47506]
 
−
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 
−
** [http://www.uniprot.org/uniprot/P43774 P43774]
 
−
** [http://www.uniprot.org/uniprot/P12013 P12013]
 
−
** [http://www.uniprot.org/uniprot/P41576 P41576]
 
−
** [http://www.uniprot.org/uniprot/P00350 P00350]
 
−
** [http://www.uniprot.org/uniprot/P00349 P00349]
 
−
** [http://www.uniprot.org/uniprot/P52209 P52209]
 
−
** [http://www.uniprot.org/uniprot/P41581 P41581]
 
−
** [http://www.uniprot.org/uniprot/P41582 P41582]
 
−
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 
−
** [http://www.uniprot.org/uniprot/P41583 P41583]
 
−
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 
−
** [http://www.uniprot.org/uniprot/P37754 P37754]
 
−
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 
−
** [http://www.uniprot.org/uniprot/P52207 P52207]
 
−
** [http://www.uniprot.org/uniprot/P70718 P70718]
 
−
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 
−
** [http://www.uniprot.org/uniprot/P41572 P41572]
 
−
** [http://www.uniprot.org/uniprot/P14062 P14062]
 
−
** [http://www.uniprot.org/uniprot/P21577 P21577]
 
−
** [http://www.uniprot.org/uniprot/P38720 P38720]
 
−
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 
−
** [http://www.uniprot.org/uniprot/P53319 P53319]
 
−
** [http://www.uniprot.org/uniprot/O81237 O81237]
 
−
** [http://www.uniprot.org/uniprot/O81238 O81238]
 
−
** [http://www.uniprot.org/uniprot/O81239 O81239]
 
−
** [http://www.uniprot.org/uniprot/O22111 O22111]
 
−
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 
−
** [http://www.uniprot.org/uniprot/O32911 O32911]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]|phosphogluconate dehydrogenase (decarboxylating)}}
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|beta-ketoacyl synthase, partial|3-oxo-decanoyl-[acyl-carrier protein] synthase|beta-ketoacyl synthase, n-terminal|thiolase-like, subgroup}}
−
{{#set: ec-number=ec-1.1.1.351}}
+
{{#set: ec-number=ec-2.3.1.41}}
−
{{#set: synonymous=6-phosphogluconic carboxylase|6-phosphogluconic dehydrogenase|6pgd|phosphogluconic acid dehydrogenase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
 
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}

Revision as of 12:19, 12 January 2021

Reaction RXN-9527

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-decanoyl-[acyl-carrier protein] synthase
    • beta-ketoacyl synthase, n-terminal
    • thiolase-like, subgroup
    • beta-ketoacyl synthase, partial
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 28 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxo-decanoyl-[acyl-carrier protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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