Difference between revisions of "ExchangeSeed FE+2"

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(Created page with "Category:reaction == Reaction RXN-14903 == * direction: ** left-to-right * common-name: ** proline dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.5.5.2 ec-1....")
(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * direction: ** left-to-right * common-name: ** inorganic diphosphatase ** inorganic pyrophosphatase * ec-number: **...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14903 ==
+
== Reaction INORGPYROPHOSPHAT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** proline dehydrogenase
+
** inorganic diphosphatase
 +
** inorganic pyrophosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.5.2 ec-1.5.5.2]
+
** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETR-Quinones]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-18_001350]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[Ec-01_004120]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[Ec-04_003260]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[Ec-01_011640]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-28_000170]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-26_005670]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-14_005330]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-10_002590]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-02_000870]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-18_000740]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[Ec-12_002140]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-24_002020]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5737]], (5R)-carbapenem carboxylate biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PROUT-PWY]], L-proline degradation:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23785 23785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P95629 P95629]
+
** [http://www.uniprot.org/uniprot/P21616 P21616]
−
** [http://www.uniprot.org/uniprot/Q59206 Q59206]
+
** [http://www.uniprot.org/uniprot/P31414 P31414]
−
** [http://www.uniprot.org/uniprot/P74275 P74275]
+
** [http://www.uniprot.org/uniprot/P28239 P28239]
−
** [http://www.uniprot.org/uniprot/P10503 P10503]
+
** [http://www.uniprot.org/uniprot/P37980 P37980]
−
** [http://www.uniprot.org/uniprot/Q51873 Q51873]
+
** [http://www.uniprot.org/uniprot/P84491 P84491]
−
** [http://www.uniprot.org/uniprot/Q59426 Q59426]
+
** [http://www.uniprot.org/uniprot/O59570 O59570]
−
** [http://www.uniprot.org/uniprot/O24897 O24897]
+
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
−
** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
+
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
−
** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
+
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
−
** [http://www.uniprot.org/uniprot/P09546 P09546]
+
** [http://www.uniprot.org/uniprot/O26363 O26363]
−
** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
+
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
−
** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
+
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
−
** [http://www.uniprot.org/uniprot/Q04499 Q04499]
+
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01253 R01253]
+
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 +
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 +
** [http://www.uniprot.org/uniprot/P47593 P47593]
 +
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 +
** [http://www.uniprot.org/uniprot/O05724 O05724]
 +
** [http://www.uniprot.org/uniprot/P19514 P19514]
 +
** [http://www.uniprot.org/uniprot/P00817 P00817]
 +
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 +
** [http://www.uniprot.org/uniprot/P13998 P13998]
 +
** [http://www.uniprot.org/uniprot/P19117 P19117]
 +
** [http://www.uniprot.org/uniprot/P21216 P21216]
 +
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 +
** [http://www.uniprot.org/uniprot/P37981 P37981]
 +
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 +
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 +
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 +
** [http://www.uniprot.org/uniprot/P50308 P50308]
 +
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 +
** [http://www.uniprot.org/uniprot/P93409 P93409]
 +
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 +
** [http://www.uniprot.org/uniprot/P93410 P93410]
 +
** [http://www.uniprot.org/uniprot/P75250 P75250]
 +
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 +
** [http://www.uniprot.org/uniprot/O48556 O48556]
 +
** [http://www.uniprot.org/uniprot/O22537 O22537]
 +
** [http://www.uniprot.org/uniprot/O82793 O82793]
 +
** [http://www.uniprot.org/uniprot/O23979 O23979]
 +
** [http://www.uniprot.org/uniprot/O49949 O49949]
 +
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 +
** [http://www.uniprot.org/uniprot/O22124 O22124]
 +
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 +
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 +
** [http://www.uniprot.org/uniprot/O65151 O65151]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=proline dehydrogenase}}
+
{{#set: common-name=inorganic diphosphatase|inorganic pyrophosphatase}}
−
{{#set: ec-number=ec-1.5.5.2}}
+
{{#set: ec-number=ec-3.6.1.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=11}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}

Revision as of 15:59, 12 January 2021

Reaction INORGPYROPHOSPHAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • inorganic diphosphatase
    • inorganic pyrophosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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