Difference between revisions of "5.1.1.16-RXN"

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(Created page with "Category:reaction == Reaction ARGSUCCINSYN-RXN == * direction: ** left-to-right * common-name: ** argininosuccinate synthetase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** phytoene synthase; chloroplast precursor * synonymous: ** psase ** geranylger...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGSUCCINSYN-RXN ==
+
== Reaction 2.5.1.32-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** argininosuccinate synthetase
+
** phytoene synthase; chloroplast precursor
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/6.3.4.5 ec-6.3.4.5]
+
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[L-CITRULLINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-ARGININO-SUCCINATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-01_001870]]
+
* Gene: [[Ec-04_002810]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-4984]], urea cycle:
+
* [[PWY-6287]], neurosporene biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4983]], nitric oxide biosynthesis II (mammals):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01954 R01954]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22768 P22768]
+
** [http://www.uniprot.org/uniprot/P53609 P53609]
−
** [http://www.uniprot.org/uniprot/P0A6E4 P0A6E4]
+
** [http://www.uniprot.org/uniprot/P37295 P37295]
−
** [http://www.uniprot.org/uniprot/P00966 P00966]
+
** [http://www.uniprot.org/uniprot/P22872 P22872]
−
** [http://www.uniprot.org/uniprot/P16460 P16460]
+
** [http://www.uniprot.org/uniprot/P53610 P53610]
−
** [http://www.uniprot.org/uniprot/P13256 P13256]
+
** [http://www.uniprot.org/uniprot/P53612 P53612]
−
** [http://www.uniprot.org/uniprot/P13257 P13257]
+
** [http://www.uniprot.org/uniprot/P17056 P17056]
−
** [http://www.uniprot.org/uniprot/P09034 P09034]
+
** [http://www.uniprot.org/uniprot/P49293 P49293]
−
** [http://www.uniprot.org/uniprot/P24532 P24532]
 
−
** [http://www.uniprot.org/uniprot/Q9PHK7 Q9PHK7]
 
−
** [http://www.uniprot.org/uniprot/P57799 P57799]
 
−
** [http://www.uniprot.org/uniprot/Q60174 Q60174]
 
−
** [http://www.uniprot.org/uniprot/P44315 P44315]
 
−
** [http://www.uniprot.org/uniprot/Q9JWM1 Q9JWM1]
 
−
** [http://www.uniprot.org/uniprot/P50986 P50986]
 
−
** [http://www.uniprot.org/uniprot/Q06734 Q06734]
 
−
** [http://www.uniprot.org/uniprot/P0C1A1 P0C1A1]
 
−
** [http://www.uniprot.org/uniprot/Q59491 Q59491]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=argininosuccinate synthetase}}
+
{{#set: common-name=phytoene synthase; chloroplast precursor}}
−
{{#set: ec-number=ec-6.3.4.5}}
+
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 16:02, 12 January 2021

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • common-name:
    • phytoene synthase; chloroplast precursor
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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