Difference between revisions of "RXN1G-460"

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(Created page with "Category:reaction == Reaction 3.2.1.58-RXN == * direction: ** left-to-right * common-name: ** glycoside hydrolase, catalytic domain ** exo-1,3-beta-glucanase, family gh5 *...")
(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen decarboxylase, chloroplast precursor * ec-number: ** [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.58-RXN ==
+
== Reaction UROGENDECARBOX-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycoside hydrolase, catalytic domain
+
** uroporphyrinogen decarboxylase, chloroplast precursor
−
** exo-1,3-beta-glucanase, family gh5
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.58 ec-3.2.1.58]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[ALPHA-GLUCOSE]][c]
+
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-19_000430]]
+
* Gene: [[Ec-24_000620]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[Ec-00_002090]]
+
* Gene: [[Ec-01_000360]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-24_000650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P15703 P15703]
+
** [http://www.uniprot.org/uniprot/P06132 P06132]
−
** [http://www.uniprot.org/uniprot/P23776 P23776]
+
** [http://www.uniprot.org/uniprot/P16891 P16891]
−
** [http://www.uniprot.org/uniprot/P38081 P38081]
+
** [http://www.uniprot.org/uniprot/P32395 P32395]
−
** [http://www.uniprot.org/uniprot/P52911 P52911]
+
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
−
** [http://www.uniprot.org/uniprot/Q7M4X3 Q7M4X3]
+
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
−
** [http://www.uniprot.org/uniprot/Q12539 Q12539]
+
** [http://www.uniprot.org/uniprot/P29680 P29680]
−
** [http://www.uniprot.org/uniprot/Q12540 Q12540]
+
** [http://www.uniprot.org/uniprot/P32347 P32347]
−
** [http://www.uniprot.org/uniprot/Q42835 Q42835]
+
** [http://www.uniprot.org/uniprot/P32920 P32920]
−
** [http://www.uniprot.org/uniprot/O59898 O59898]
+
** [http://www.uniprot.org/uniprot/P54224 P54224]
−
** [http://www.uniprot.org/uniprot/O82151 O82151]
+
** [http://www.uniprot.org/uniprot/O81220 O81220]
 +
** [http://www.uniprot.org/uniprot/P70697 P70697]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=exo-1,3-beta-glucanase, family gh5|glycoside hydrolase, catalytic domain}}
+
{{#set: common-name=uroporphyrinogen decarboxylase, chloroplast precursor}}
−
{{#set: ec-number=ec-3.2.1.58}}
+
{{#set: ec-number=ec-4.1.1.37}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 18:45, 12 January 2021

Reaction UROGENDECARBOX-RXN

  • direction:
    • left-to-right
  • common-name:
    • uroporphyrinogen decarboxylase, chloroplast precursor
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7766, heme b biosynthesis IV (Gram-positive bacteria):
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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