Difference between revisions of "RXN-9556"
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(Created page with "Category:reaction == Reaction RXN-14209 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1] == Reaction formula == * 1 4-AMINO-BUT...") |
(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * direction: ** reversible * common-name: ** phosphoglycerate dehydrogenase / phosphoserine aminotransferase ** d-isomer...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction PGLYCDEHYDROG-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
| + | * common-name: | ||
| + | ** phosphoglycerate dehydrogenase / phosphoserine aminotransferase | ||
| + | ** d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding domain | ||
| + | ** allosteric substrate binding domain | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[Ec- | + | * Gene: [[Ec-17_000820]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
| + | * Gene: [[Ec-04_006300]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[Ec-11_000960]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[SERSYN-PWY]], L-serine biosynthesis I: | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513] |
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/Q58424 Q58424] | ||
| + | ** [http://www.uniprot.org/uniprot/P43885 P43885] | ||
| + | ** [http://www.uniprot.org/uniprot/P35136 P35136] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40] | ||
| + | ** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0] | ||
| + | ** [http://www.uniprot.org/uniprot/P40510 P40510] | ||
| + | ** [http://www.uniprot.org/uniprot/P40054 P40054] | ||
| + | ** [http://www.uniprot.org/uniprot/O49485 O49485] | ||
| + | ** [http://www.uniprot.org/uniprot/P87228 P87228] | ||
| + | ** [http://www.uniprot.org/uniprot/O04130 O04130] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
| − | {{#set: ec-number=ec-1. | + | {{#set: common-name=allosteric substrate binding domain|phosphoglycerate dehydrogenase / phosphoserine aminotransferase|d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding domain}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.1.1.95}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=1}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=annotation|orthology}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_aragem}} | + | {{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}} |
Revision as of 18:49, 12 January 2021
Contents
Reaction PGLYCDEHYDROG-RXN
- direction:
- reversible
- common-name:
- phosphoglycerate dehydrogenase / phosphoserine aminotransferase
- d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding domain
- allosteric substrate binding domain
- ec-number:
Reaction formula
- 1 G3P[c] + 1 NAD[c] <=> 1 3-P-HYDROXYPYRUVATE[c] + 1 NADH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: Ec-17_000820
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: Ec-04_006300
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: Ec-11_000960
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- SERSYN-PWY, L-serine biosynthesis I:
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_aragem; tool: pantograph; comment: n.a
- category: annotation; source: esiliculosus_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
