Difference between revisions of "DISULISOM-RXN"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * direction: ** left-to-right * common-name: ** tryptophan synthase beta subunit-like plp-dependent enzyme ** tryptophan synthas...")
(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.5...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2382 ==
+
== Reaction APIGNAR-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tryptophan synthase beta subunit-like plp-dependent enzyme
+
** naringenin chalcone isomerase
−
** tryptophan synthase (alpha / beta chains)
 
−
** tryptophan synthase, beta chain
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
+
** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[Ec-00_005930]]
−
* Gene: [[Ec-20_002800]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
* Gene: [[Ec-05_001880]]
−
* Gene: [[Ec-24_004010]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-06_007490]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-24_002360]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-17_002680]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-27_001950]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-01_012080]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-00_008830]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7397]], naringenin biosynthesis (engineered):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11650 P11650]
 +
** [http://www.uniprot.org/uniprot/P11651 P11651]
 +
** [http://www.uniprot.org/uniprot/P41088 P41088]
 +
** [http://www.uniprot.org/uniprot/P14298 P14298]
 +
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 +
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 +
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 +
** [http://www.uniprot.org/uniprot/P28012 P28012]
 +
** [http://www.uniprot.org/uniprot/P41089 P41089]
 +
** [http://www.uniprot.org/uniprot/O81980 O81980]
 +
** [http://www.uniprot.org/uniprot/O22604 O22604]
 +
** [http://www.uniprot.org/uniprot/O22651 O22651]
 +
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan synthase, beta chain|tryptophan synthase beta subunit-like plp-dependent enzyme|tryptophan synthase (alpha / beta chains)}}
+
{{#set: common-name=naringenin chalcone isomerase}}
−
{{#set: ec-number=ec-4.2.1.122}}
+
{{#set: ec-number=ec-5.5.1.6}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=output_pantograph_aragem}}

Revision as of 18:51, 12 January 2021

Reaction APIGNAR-RXN

  • direction:
    • left-to-right
  • common-name:
    • naringenin chalcone isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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