Difference between revisions of "RXN-5471"

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(Created page with "Category:reaction == Reaction HOMSUCTRAN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46] == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction RXN-12729 == * direction: ** left-to-right * common-name: ** cystathionine beta-lyase ** cys/met metabolism, pyridoxal phosphate-dependent en...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOMSUCTRAN-RXN ==
+
== Reaction RXN-12729 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** cystathionine beta-lyase
 +
** cys/met metabolism, pyridoxal phosphate-dependent enzyme
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46]
+
** [http://enzyme.expasy.org/EC/4.4.1.8 ec-4.4.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HOMO-SER]][c] '''+''' 1 [[SUC-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c]
+
* 1 [[CPD-13717]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[SELENOHOMOCYSTEINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[Ec-00_002820]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-05_006760]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
+
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22009 22009]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01777 R01777]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PLV2 Q9PLV2]
 
−
** [http://www.uniprot.org/uniprot/Q9CEC5 Q9CEC5]
 
−
** [http://www.uniprot.org/uniprot/P07623 P07623]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.3.1.46}}
+
{{#set: common-name=cystathionine beta-lyase|cys/met metabolism, pyridoxal phosphate-dependent enzyme}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-4.4.1.8}}
 +
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 18:51, 12 January 2021

Reaction RXN-12729

  • direction:
    • left-to-right
  • common-name:
    • cystathionine beta-lyase
    • cys/met metabolism, pyridoxal phosphate-dependent enzyme
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6936, seleno-amino acid biosynthesis (plants):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//esilgem/index.php?title=RXN-5471&oldid=37657"