Difference between revisions of "DTDPKIN-RXN"
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(Created page with "Category:reaction == Reaction RXN-14325 == * direction: ** left-to-right * common-name: ** ctp synthase == Reaction formula == * 1 AMMONIUM[c] '''+''' 1 ATP[c] '''...") |
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase, ** aconitase/3-isopropylmalate dehydratase, swivel =...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ACONITATEDEHYDR-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** aconitate hydratase, |
+ | ** aconitase/3-isopropylmalate dehydratase, swivel | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[Ec- | + | * Gene: [[Ec-16_001000]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | * Gene: [[Ec-12_000170]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
+ | ** '''8''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VI (Helicobacter): | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5392]], reductive TCA cycle II: | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5750]], itaconate biosynthesis I: | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231] |
− | {{#set: direction= | + | * PIR: |
− | {{#set: common-name= | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P16276 P16276] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01059 Q01059] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5] | ||
+ | ** [http://www.uniprot.org/uniprot/P37032 P37032] | ||
+ | ** [http://www.uniprot.org/uniprot/P81291 P81291] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88] | ||
+ | ** [http://www.uniprot.org/uniprot/P36683 P36683] | ||
+ | ** [http://www.uniprot.org/uniprot/O53166 O53166] | ||
+ | ** [http://www.uniprot.org/uniprot/P25516 P25516] | ||
+ | ** [http://www.uniprot.org/uniprot/P09339 P09339] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05] | ||
+ | ** [http://www.uniprot.org/uniprot/Q99798 Q99798] | ||
+ | ** [http://www.uniprot.org/uniprot/P28271 P28271] | ||
+ | ** [http://www.uniprot.org/uniprot/P21399 P21399] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42669 Q42669] | ||
+ | ** [http://www.uniprot.org/uniprot/P19414 P19414] | ||
+ | ** [http://www.uniprot.org/uniprot/P20004 P20004] | ||
+ | ** [http://www.uniprot.org/uniprot/P49609 P49609] | ||
+ | ** [http://www.uniprot.org/uniprot/P74582 P74582] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42560 Q42560] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36] | ||
+ | ** [http://www.uniprot.org/uniprot/O04916 O04916] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=aconitase/3-isopropylmalate dehydratase, swivel|aconitate hydratase,}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=16}} |
− | {{#set: reconstruction category= | + | {{#set: reconstruction category=annotation}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction tool=pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=esiliculosus_genome | + | {{#set: reconstruction source=esiliculosus_genome}} |
Revision as of 18:51, 12 January 2021
Contents
Reaction ACONITATEDEHYDR-RXN
- direction:
- reversible
- common-name:
- aconitate hydratase,
- aconitase/3-isopropylmalate dehydratase, swivel
Reaction formula
- 1 CIT[c] <=> 1 CIS-ACONITATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: Ec-16_001000
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: Ec-12_000170
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7254, TCA cycle VII (acetate-producers):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 8 reactions found over 16 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 11 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 6 reactions found over 6 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
- 10 reactions found over 12 reactions in the full pathway
- REDCITCYC, TCA cycle VI (Helicobacter):
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398, TCA cycle III (animals):
- 10 reactions found over 10 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic):
- 9 reactions found over 10 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi):
- 8 reactions found over 9 reactions in the full pathway
- P23-PWY, reductive TCA cycle I:
- 10 reactions found over 12 reactions in the full pathway
- PWY-5392, reductive TCA cycle II:
- 6 reactions found over 12 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 9 reactions found over 11 reactions in the full pathway
- PWY-5750, itaconate biosynthesis I:
- 3 reactions found over 2 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728, methylaspartate cycle:
- 11 reactions found over 19 reactions in the full pathway
Reconstruction information
- category: annotation; source: esiliculosus_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- PIR:
- UNIPROT:
- LIGAND-RXN: