Difference between revisions of "ExchangeSeed CPD-315"

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(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase, partial ** ureohydrolase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-12861 == * direction: ** left-to-right * common-name: ** dehydroascorbate hydrolase == Reaction formula == * 1 CPD-13907[c] '''=>'''...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction AGMATIN-RXN ==
+
== Reaction RXN-12861 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** agmatinase, partial
+
** dehydroascorbate hydrolase
** ureohydrolase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
+
* 1 [[CPD-13907]][c] '''=>''' 1 [[CPD-334]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[Ec-17_004300]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[Ec-22_003700]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[Ec-17_004310]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-40]], putrescine biosynthesis I:
+
* [[PWY-6959]], L-ascorbate degradation V:
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
+
* [[PWY-6961]], L-ascorbate degradation II (bacterial, aerobic):
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 
** '''3''' reactions found over '''n.a''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P60654 P60654]
 
** [http://www.uniprot.org/uniprot/P60653 P60653]
 
** [http://www.uniprot.org/uniprot/P60651 P60651]
 
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=ureohydrolase|agmatinase, partial}}
+
{{#set: common-name=dehydroascorbate hydrolase}}
{{#set: ec-number=ec-3.5.3.11}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=2}}
{{#set: nb pathway associated=3}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 16:56, 13 January 2021

Reaction RXN-12861

  • direction:
    • left-to-right
  • common-name:
    • dehydroascorbate hydrolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6959, L-ascorbate degradation V:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6961, L-ascorbate degradation II (bacterial, aerobic):
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links