Difference between revisions of "ExchangeSeed SULFATE"

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(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:reaction == Reaction TYROSINE-AMINOTRANSFERASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.57 ec-2.6.1.57] ** [http://enz...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACYLCOADEHYDROG-RXN ==
+
== Reaction TYROSINE-AMINOTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** acyl-coa dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
+
** [http://enzyme.expasy.org/EC/2.6.1.57 ec-2.6.1.57]
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/2.6.1.5 ec-2.6.1.5]
−
** long-chain acyl-coa dehydrogenase
 
−
** general acyl coa dehydrogenase
 
−
** acyl coenzyme a dehydrogenase
 
−
** long-chain acyl coenzyme a dehydrogenase
 
−
** medium-chain acyl-coenzyme a dehydrogenase
 
−
** fatty-acyl-coa dehydrogenase
 
−
** fatty acyl coenzyme a dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TYR]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-06_008910]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-14_001600]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-08_006390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-21_001100]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-16_004260]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-03_003490]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-3581]], (S)-reticuline biosynthesis I:
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY3O-4108]], L-tyrosine degradation III:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5151]], L-tyrosine degradation II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7518]], atromentin biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5048]], rosmarinic acid biosynthesis I:
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[TYRSYN]], L-tyrosine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15096 15096]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16219 P16219]
+
** [http://www.uniprot.org/uniprot/P74861 P74861]
−
** [http://www.uniprot.org/uniprot/P45952 P45952]
+
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
−
** [http://www.uniprot.org/uniprot/P15651 P15651]
+
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
−
** [http://www.uniprot.org/uniprot/P11310 P11310]
+
** [http://www.uniprot.org/uniprot/P95468 P95468]
−
** [http://www.uniprot.org/uniprot/P08503 P08503]
+
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
−
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
+
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
−
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
+
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
−
** [http://www.uniprot.org/uniprot/P45867 P45867]
+
** [http://www.uniprot.org/uniprot/O58489 O58489]
−
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
+
** [http://www.uniprot.org/uniprot/O59096 O59096]
−
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
+
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
−
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
+
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
−
{{#set: common-name=acyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
−
{{#set: ec-number=ec-1.3.8}}
+
** [http://www.uniprot.org/uniprot/O84642 O84642]
−
{{#set: synonymous=acyl coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase|medium-chain acyl-coenzyme a dehydrogenase|general acyl coa dehydrogenase|fatty acyl coenzyme a dehydrogenase|long-chain acyl-coa dehydrogenase|fatty-acyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P17735 P17735]
−
{{#set: nb gene associated=6}}
+
** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P04693 P04693]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P04694 P04694]
−
{{#set: reconstruction tool=pathwaytools}}
+
* LIGAND-RXN:
−
{{#set: reconstruction comment=n.a}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
−
{{#set: reconstruction source=esiliculosus_genome}}
+
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-2.6.1.5|ec-2.6.1.57}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=10}}
 +
{{#set: reconstruction category=gap-filling}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}
 +
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 16:59, 13 January 2021

Reaction TYROSINE-AMINOTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TYRFUMCAT-PWY, L-tyrosine degradation I:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5886, 4-hydroxyphenylpyruvate biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3581, (S)-reticuline biosynthesis I:
    • 3 reactions found over 11 reactions in the full pathway
  • PWY3O-4108, L-tyrosine degradation III:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7514, L-tyrosine degradation IV (to 4-methylphenol):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5151, L-tyrosine degradation II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7518, atromentin biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5048, rosmarinic acid biosynthesis I:
    • 1 reactions found over 10 reactions in the full pathway
  • TYRSYN, L-tyrosine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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