Difference between revisions of "TransportSeed COB-I-ALAMIN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * direction: ** left-to-right * common-name: ** tryptophan synthase beta subunit-like plp-dependent enzyme ** tryptophan synth...")
(Created page with "Category:reaction == Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN == * direction: ** left-to-right * common-name: ** ribonucleoside-diphosphate reductase activity, thioredoxin...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPSYN-RXN ==
+
== Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tryptophan synthase beta subunit-like plp-dependent enzyme
+
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
−
** tryptophan synthase, beta chain
+
** esv-1-128
−
** tryptophan synthase (alpha / beta chains)
+
** esv-1-180
 +
** ribonucleoside-diphosphate reductase small chain
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
+
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Ribonucleoside-Diphosphates]][c] '''=>''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[Ec-21_002920]]
−
* Gene: [[Ec-00_008830]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[Ec-17_002680]]
+
* Gene: [[Ec-19_000440]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[Ec-24_004010]]
+
* Gene: [[Ec-11_002170]]
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-20_002800]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[Ec-24_002360]]
+
* Gene: [[Ec-06_005570]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[Ec-06_005120]]
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-27_001950]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-06_007490]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[Ec-01_012080]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23254 23254]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** [http://www.uniprot.org/uniprot/P89462 P89462]
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
** [http://www.uniprot.org/uniprot/P09938 P09938]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
** [http://www.uniprot.org/uniprot/P32984 P32984]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** [http://www.uniprot.org/uniprot/P50647 P50647]
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
** [http://www.uniprot.org/uniprot/P50650 P50650]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
+
** [http://www.uniprot.org/uniprot/P50620 P50620]
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
** [http://www.uniprot.org/uniprot/O83972 O83972]
−
** [http://www.uniprot.org/uniprot/P12290 P12290]
+
** [http://www.uniprot.org/uniprot/P43755 P43755]
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
+
** [http://www.uniprot.org/uniprot/P39452 P39452]
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
** [http://www.uniprot.org/uniprot/O66503 O66503]
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
+
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
+
** [http://www.uniprot.org/uniprot/P47473 P47473]
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
+
** [http://www.uniprot.org/uniprot/P37146 P37146]
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
** [http://www.uniprot.org/uniprot/O26748 O26748]
−
** [http://www.uniprot.org/uniprot/P07601 P07601]
+
** [http://www.uniprot.org/uniprot/O28609 O28609]
−
** [http://www.uniprot.org/uniprot/P06561 P06561]
+
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
+
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
−
** [http://www.uniprot.org/uniprot/P06562 P06562]
+
** [http://www.uniprot.org/uniprot/P55982 P55982]
−
** [http://www.uniprot.org/uniprot/O27696 O27696]
+
** [http://www.uniprot.org/uniprot/P03190 P03190]
−
** [http://www.uniprot.org/uniprot/O28672 O28672]
+
** [http://www.uniprot.org/uniprot/P00452 P00452]
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
+
** [http://www.uniprot.org/uniprot/P69924 P69924]
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
+
** [http://www.uniprot.org/uniprot/P07201 P07201]
−
** [http://www.uniprot.org/uniprot/P43760 P43760]
+
** [http://www.uniprot.org/uniprot/P26713 P26713]
−
** [http://www.uniprot.org/uniprot/P34817 P34817]
+
** [http://www.uniprot.org/uniprot/P11158 P11158]
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
+
** [http://www.uniprot.org/uniprot/P11157 P11157]
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
+
** [http://www.uniprot.org/uniprot/P23921 P23921]
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
+
** [http://www.uniprot.org/uniprot/P31350 P31350]
−
** [http://www.uniprot.org/uniprot/P19868 P19868]
+
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
+
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
+
** [http://www.uniprot.org/uniprot/P37426 P37426]
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
+
** [http://www.uniprot.org/uniprot/P17424 P17424]
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
+
** [http://www.uniprot.org/uniprot/P36602 P36602]
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
+
** [http://www.uniprot.org/uniprot/P36603 P36603]
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
+
** [http://www.uniprot.org/uniprot/P50643 P50643]
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
+
** [http://www.uniprot.org/uniprot/P50645 P50645]
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
+
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
+
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
+
** [http://www.uniprot.org/uniprot/P49723 P49723]
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
+
** [http://www.uniprot.org/uniprot/P50651 P50651]
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
+
** [http://www.uniprot.org/uniprot/P78027 P78027]
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
+
** [http://www.uniprot.org/uniprot/P74240 P74240]
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
+
** [http://www.uniprot.org/uniprot/O36410 O36410]
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
+
** [http://www.uniprot.org/uniprot/O36411 O36411]
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
+
** [http://www.uniprot.org/uniprot/P49730 P49730]
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
+
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
+
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
+
** [http://www.uniprot.org/uniprot/O41111 O41111]
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
+
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
+
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
+
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
+
** [http://www.uniprot.org/uniprot/O57175 O57175]
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
+
** [http://www.uniprot.org/uniprot/O39262 O39262]
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
+
** [http://www.uniprot.org/uniprot/O39263 O39263]
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
+
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
+
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
+
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
+
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 +
** [http://www.uniprot.org/uniprot/P03175 P03175]
 +
** [http://www.uniprot.org/uniprot/P09247 P09247]
 +
** [http://www.uniprot.org/uniprot/P09248 P09248]
 +
** [http://www.uniprot.org/uniprot/P28847 P28847]
 +
** [http://www.uniprot.org/uniprot/P28846 P28846]
 +
** [http://www.uniprot.org/uniprot/P69520 P69520]
 +
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 +
** [http://www.uniprot.org/uniprot/P10224 P10224]
 +
** [http://www.uniprot.org/uniprot/P16782 P16782]
 +
** [http://www.uniprot.org/uniprot/P20503 P20503]
 +
** [http://www.uniprot.org/uniprot/P26685 P26685]
 +
** [http://www.uniprot.org/uniprot/P12848 P12848]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan synthase, beta chain|tryptophan synthase beta subunit-like plp-dependent enzyme|tryptophan synthase (alpha / beta chains)}}
+
{{#set: common-name=esv-1-180|esv-1-128|ribonucleoside-diphosphate reductase small chain|ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: ec-number=ec-1.17.4.1}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 17:04, 13 January 2021

Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN

  • direction:
    • left-to-right
  • common-name:
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
    • esv-1-128
    • esv-1-180
    • ribonucleoside-diphosphate reductase small chain
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esilgem/index.php?title=TransportSeed_COB-I-ALAMIN&oldid=52715"