Difference between revisions of "RXN-21830"

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(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * common-name: ** phytoene synthase; chloroplast precursor * synonymous: ** psase ** prephytoene...")
(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase, partial ** ureohydrolase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXNARA-8002 ==
+
== Reaction AGMATIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phytoene synthase; chloroplast precursor
+
** agmatinase, partial
−
* synonymous:
+
** ureohydrolase
−
** psase
+
* ec-number:
−
** prephytoene-diphosphate synthase
+
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-04_002810]]
+
* Gene: [[Ec-17_004300]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-22_003700]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[Ec-17_004310]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5942]], trans-lycopene biosynthesis I:
+
* [[PWY-40]], putrescine biosynthesis I:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6287]], neurosporene biosynthesis:
+
* [[PWY-6305]], superpathway of putrescine biosynthesis:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''n.a''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P60654 P60654]
 +
** [http://www.uniprot.org/uniprot/P60653 P60653]
 +
** [http://www.uniprot.org/uniprot/P60651 P60651]
 +
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phytoene synthase; chloroplast precursor}}
+
{{#set: common-name=ureohydrolase|agmatinase, partial}}
−
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase|prephytoene-diphosphate synthase}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Revision as of 09:25, 14 January 2021

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase, partial
    • ureohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-40, putrescine biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6305, superpathway of putrescine biosynthesis:
    • 3 reactions found over n.a reactions in the full pathway

Reconstruction information

External links





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