Difference between revisions of "TransportSeed COB-I-ALAMIN"

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(Created page with "Category:reaction == Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN == * direction: ** left-to-right * common-name: ** ribonucleoside-diphosphate reductase activity, thioredoxin...")
(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase, putative chloroplast precursor * ec-number:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN ==
+
== Reaction PROTOPORGENOXI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
+
** protoporphyrinogen oxidase, putative chloroplast precursor
−
** esv-1-128
 
−
** esv-1-180
 
−
** ribonucleoside-diphosphate reductase small chain
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Ribonucleoside-Diphosphates]][c] '''=>''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
+
* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-21_002920]]
+
* Gene: [[Ec-25_003100]]
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-19_000440]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-11_002170]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-06_005570]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-06_005120]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23254 23254]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P89462 P89462]
+
** [http://www.uniprot.org/uniprot/P50336 P50336]
−
** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
+
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
−
** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
+
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
−
** [http://www.uniprot.org/uniprot/P09938 P09938]
+
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
−
** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
+
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
−
** [http://www.uniprot.org/uniprot/P32984 P32984]
+
** [http://www.uniprot.org/uniprot/P51175 P51175]
−
** [http://www.uniprot.org/uniprot/P50647 P50647]
+
** [http://www.uniprot.org/uniprot/O24163 O24163]
−
** [http://www.uniprot.org/uniprot/P50650 P50650]
+
** [http://www.uniprot.org/uniprot/O24164 O24164]
−
** [http://www.uniprot.org/uniprot/P50620 P50620]
+
** [http://www.uniprot.org/uniprot/O64384 O64384]
−
** [http://www.uniprot.org/uniprot/O83972 O83972]
+
** [http://www.uniprot.org/uniprot/O64385 O64385]
−
** [http://www.uniprot.org/uniprot/P43755 P43755]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
 
−
** [http://www.uniprot.org/uniprot/P39452 P39452]
 
−
** [http://www.uniprot.org/uniprot/O66503 O66503]
 
−
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
 
−
** [http://www.uniprot.org/uniprot/P47473 P47473]
 
−
** [http://www.uniprot.org/uniprot/P37146 P37146]
 
−
** [http://www.uniprot.org/uniprot/O26748 O26748]
 
−
** [http://www.uniprot.org/uniprot/O28609 O28609]
 
−
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
 
−
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
 
−
** [http://www.uniprot.org/uniprot/P55982 P55982]
 
−
** [http://www.uniprot.org/uniprot/P03190 P03190]
 
−
** [http://www.uniprot.org/uniprot/P00452 P00452]
 
−
** [http://www.uniprot.org/uniprot/P69924 P69924]
 
−
** [http://www.uniprot.org/uniprot/P07201 P07201]
 
−
** [http://www.uniprot.org/uniprot/P26713 P26713]
 
−
** [http://www.uniprot.org/uniprot/P11158 P11158]
 
−
** [http://www.uniprot.org/uniprot/P11157 P11157]
 
−
** [http://www.uniprot.org/uniprot/P23921 P23921]
 
−
** [http://www.uniprot.org/uniprot/P31350 P31350]
 
−
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
 
−
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
 
−
** [http://www.uniprot.org/uniprot/P37426 P37426]
 
−
** [http://www.uniprot.org/uniprot/P17424 P17424]
 
−
** [http://www.uniprot.org/uniprot/P36602 P36602]
 
−
** [http://www.uniprot.org/uniprot/P36603 P36603]
 
−
** [http://www.uniprot.org/uniprot/P50643 P50643]
 
−
** [http://www.uniprot.org/uniprot/P50645 P50645]
 
−
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
 
−
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
 
−
** [http://www.uniprot.org/uniprot/P49723 P49723]
 
−
** [http://www.uniprot.org/uniprot/P50651 P50651]
 
−
** [http://www.uniprot.org/uniprot/P78027 P78027]
 
−
** [http://www.uniprot.org/uniprot/P74240 P74240]
 
−
** [http://www.uniprot.org/uniprot/O36410 O36410]
 
−
** [http://www.uniprot.org/uniprot/O36411 O36411]
 
−
** [http://www.uniprot.org/uniprot/P49730 P49730]
 
−
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
 
−
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
 
−
** [http://www.uniprot.org/uniprot/O41111 O41111]
 
−
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
 
−
** [http://www.uniprot.org/uniprot/O57175 O57175]
 
−
** [http://www.uniprot.org/uniprot/O39262 O39262]
 
−
** [http://www.uniprot.org/uniprot/O39263 O39263]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
 
−
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
 
−
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 
−
** [http://www.uniprot.org/uniprot/P03175 P03175]
 
−
** [http://www.uniprot.org/uniprot/P09247 P09247]
 
−
** [http://www.uniprot.org/uniprot/P09248 P09248]
 
−
** [http://www.uniprot.org/uniprot/P28847 P28847]
 
−
** [http://www.uniprot.org/uniprot/P28846 P28846]
 
−
** [http://www.uniprot.org/uniprot/P69520 P69520]
 
−
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 
−
** [http://www.uniprot.org/uniprot/P10224 P10224]
 
−
** [http://www.uniprot.org/uniprot/P16782 P16782]
 
−
** [http://www.uniprot.org/uniprot/P20503 P20503]
 
−
** [http://www.uniprot.org/uniprot/P26685 P26685]
 
−
** [http://www.uniprot.org/uniprot/P12848 P12848]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=esv-1-180|esv-1-128|ribonucleoside-diphosphate reductase small chain|ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
+
{{#set: common-name=protoporphyrinogen oxidase, putative chloroplast precursor}}
−
{{#set: ec-number=ec-1.17.4.1}}
+
{{#set: ec-number=ec-1.3.3.4}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}

Revision as of 09:34, 14 January 2021

Reaction PROTOPORGENOXI-RXN

  • direction:
    • left-to-right
  • common-name:
    • protoporphyrinogen oxidase, putative chloroplast precursor
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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