Difference between revisions of "2.4.1.117-RXN"

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(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * direction: ** left-to-right * common-name: ** fad-dependent pyridine nucleotide-disulphide oxidoreductase *...")
(Created page with "Category:reaction == Reaction 2OXOGLUTARATEDEH-RXN == * direction: ** left-to-right * common-name: ** 2-oxoglutarate dehydrogenase complex ** dihydrolipoamide dehydrogenas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
+
== Reaction 2OXOGLUTARATEDEH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fad-dependent pyridine nucleotide-disulphide oxidoreductase
+
** 2-oxoglutarate dehydrogenase complex
−
** pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
+
** dihydrolipoamide dehydrogenase
−
** pyridine nucleotide-disulphide oxidoreductase, nad-binding domain
+
** 2-oxoglutarate dehydrogenase e1 component
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
+
** 2-oxoglutarate dehydrogenation
 +
** α-ketoglutarate oxidative decarboxylation
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-02_005330]]
+
* Gene: [[Ec-21_002300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[Ec-19_001510]]
+
* Gene: [[Ec-25_000020]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[Ec-27_004160]]
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-19_004520]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[THIOREDOX-PWY]], thioredoxin pathway:
+
* [[PWY-5690]], TCA cycle II (plants and fungi):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27787 27787]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08549 R08549]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
 
−
** [http://www.uniprot.org/uniprot/P56431 P56431]
 
−
** [http://www.uniprot.org/uniprot/O28718 O28718]
 
−
** [http://www.uniprot.org/uniprot/P80880 P80880]
 
−
** [http://www.uniprot.org/uniprot/P43496 P43496]
 
−
** [http://www.uniprot.org/uniprot/P94284 P94284]
 
−
** [http://www.uniprot.org/uniprot/O66790 O66790]
 
−
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
 
−
** [http://www.uniprot.org/uniprot/P47348 P47348]
 
−
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
 
−
** [http://www.uniprot.org/uniprot/O26804 O26804]
 
−
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
 
−
** [http://www.uniprot.org/uniprot/P43788 P43788]
 
−
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
 
−
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
 
−
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
 
−
** [http://www.uniprot.org/uniprot/P23160 P23160]
 
−
** [http://www.uniprot.org/uniprot/P39916 P39916]
 
−
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
 
−
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
 
−
** [http://www.uniprot.org/uniprot/P38816 P38816]
 
−
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
 
−
** [http://www.uniprot.org/uniprot/P29509 P29509]
 
−
** [http://www.uniprot.org/uniprot/P52213 P52213]
 
−
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 
−
** [http://www.uniprot.org/uniprot/P75531 P75531]
 
−
** [http://www.uniprot.org/uniprot/P74746 P74746]
 
−
** [http://www.uniprot.org/uniprot/P46843 P46843]
 
−
** [http://www.uniprot.org/uniprot/O54535 O54535]
 
−
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 
−
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 
−
** [http://www.uniprot.org/uniprot/P52215 P52215]
 
−
** [http://www.uniprot.org/uniprot/P51978 P51978]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyridine nucleotide-disulphide oxidoreductase, nad-binding domain|fad-dependent pyridine nucleotide-disulphide oxidoreductase|pyridine nucleotide-disulphide oxidoreductase, dimerisation domain}}
+
{{#set: common-name=dihydrolipoamide dehydrogenase|2-oxoglutarate dehydrogenase complex|2-oxoglutarate dehydrogenase e1 component}}
−
{{#set: ec-number=ec-1.8.1.9}}
+
{{#set: synonymous=2-oxoglutarate dehydrogenation|&alpha;-ketoglutarate oxidative decarboxylation}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 09:34, 14 January 2021

Reaction 2OXOGLUTARATEDEH-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2-oxoglutarate dehydrogenase complex
    • dihydrolipoamide dehydrogenase
    • 2-oxoglutarate dehydrogenase e1 component
  • synonymous:
    • 2-oxoglutarate dehydrogenation
    • α-ketoglutarate oxidative decarboxylation

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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