Difference between revisions of "2.6.1.22-RXN"

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(Created page with "Category:reaction == Reaction ExchangeSeed_FE+3 == * direction: ** reversible == Reaction formula == * 1.0 FE+3[C-BOUNDARY] '''<=>''' 1.0 FE+3[e] == Gene(s) associ...")
(Created page with "Category:reaction == Reaction 2OXOGLUTARATEDEH-RXN == * direction: ** left-to-right * common-name: ** 2-oxoglutarate dehydrogenase complex ** dihydrolipoamide dehydrogenas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed_FE+3 ==
+
== Reaction 2OXOGLUTARATEDEH-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** 2-oxoglutarate dehydrogenase complex
 +
** dihydrolipoamide dehydrogenase
 +
** 2-oxoglutarate dehydrogenase e1 component
 +
* synonymous:
 +
** 2-oxoglutarate dehydrogenation
 +
** &alpha;-ketoglutarate oxidative decarboxylation
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[FE+3]][C-BOUNDARY] '''<=>''' 1.0 [[FE+3]][e]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[Ec-21_002300]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[Ec-25_000020]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[Ec-27_004160]]
 +
** Category: [[annotation]]
 +
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR95655
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27787 27787]
−
{{#set: reconstruction category=manual}}
+
* LIGAND-RXN:
−
{{#set: reconstruction tool=curation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R08549 R08549]
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: common-name=dihydrolipoamide dehydrogenase|2-oxoglutarate dehydrogenase e1 component|2-oxoglutarate dehydrogenase complex}}
 +
{{#set: synonymous=2-oxoglutarate dehydrogenation|&alpha;-ketoglutarate oxidative decarboxylation}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 20:31, 17 March 2021

Reaction 2OXOGLUTARATEDEH-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2-oxoglutarate dehydrogenase complex
    • dihydrolipoamide dehydrogenase
    • 2-oxoglutarate dehydrogenase e1 component
  • synonymous:
    • 2-oxoglutarate dehydrogenation
    • α-ketoglutarate oxidative decarboxylation

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR95655
  • RHEA:
  • LIGAND-RXN:





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