Difference between revisions of "RXN-13431"

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(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** aminotransferase, class i/classii * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXN-13431 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
+
== Reaction RXN-13431 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** aminotransferase, class i/classii
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 13 [[NADPH]][c] '''+''' 21 [[PROTON]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 13 [[NADP]][c] '''+''' 8 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-24_002690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-11_004190]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
+
* [[PWY-7050]], icosapentaenoate biosynthesis IV (bacteria):
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5129]], sphingolipid biosynthesis (plants):
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
−
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR118078
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P25045 P25045]
 
−
** [http://www.uniprot.org/uniprot/O15270 O15270]
 
−
** [http://www.uniprot.org/uniprot/P48241 P48241]
 
−
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 
−
** [http://www.uniprot.org/uniprot/P40970 P40970]
 
−
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 
−
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 
−
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aminotransferase, class i/classii}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: ec-number=ec-2.3.1.50}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
 

Latest revision as of 09:05, 18 March 2021

Reaction RXN-13431

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7050, icosapentaenoate biosynthesis IV (bacteria):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118078





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