Difference between revisions of "RXN-13431"

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(Created page with "Category:reaction == Reaction THYMIDYLATESYN-RXN == * direction: ** left-to-right * common-name: ** thymidylate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1...")
(Created page with "Category:reaction == Reaction RXN-13431 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
 
(6 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THYMIDYLATESYN-RXN ==
+
== Reaction RXN-13431 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** thymidylate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 13 [[NADPH]][c] '''+''' 21 [[PROTON]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 13 [[NADP]][c] '''+''' 8 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-27_004630]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
* [[PWY-7050]], icosapentaenoate biosynthesis IV (bacteria):
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** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR118078
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
 
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
 
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
 
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
 
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
 
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
 
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
 
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
 
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
 
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
 
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
 
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
 
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
 
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
 
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
 
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
 
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
 
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
 
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
 
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
 
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
 
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
 
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
 
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
 
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
 
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** [http://www.uniprot.org/uniprot/P13100 P13100]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=thymidylate synthase}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: ec-number=ec-2.1.1.45}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 09:05, 18 March 2021

Reaction RXN-13431

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7050, icosapentaenoate biosynthesis IV (bacteria):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118078





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