Difference between revisions of "RXN-13431"

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(Created page with "Category:reaction == Reaction RXN0-1461 == * direction: ** left-to-right * common-name: ** coproporphyrinogen oxidase, putative chloroplast precursor ** coproporphyrinogen...")
(Created page with "Category:reaction == Reaction RXN-13431 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1461 ==
+
== Reaction RXN-13431 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** coproporphyrinogen oxidase, putative chloroplast precursor
 
−
** coproporphyrinogen oxidase (aerobic), putative chloroplast precursor
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.3 ec-1.3.3.3]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 13 [[NADPH]][c] '''+''' 21 [[PROTON]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 13 [[NADP]][c] '''+''' 8 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-08_001470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-19_005390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
+
* [[PWY-7050]], icosapentaenoate biosynthesis IV (bacteria):
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR118078
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
 
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
 
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
 
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
 
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
 
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
 
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
 
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
 
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
 
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
 
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
 
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
 
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
 
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
 
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
 
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
 
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
 
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=coproporphyrinogen oxidase (aerobic), putative chloroplast precursor|coproporphyrinogen oxidase, putative chloroplast precursor}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: ec-number=ec-1.3.3.3}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
 

Latest revision as of 09:05, 18 March 2021

Reaction RXN-13431

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7050, icosapentaenoate biosynthesis IV (bacteria):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118078





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