Difference between revisions of "TransportSeed COB-I-ALAMIN"

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(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase, putative chloroplast precursor * ec-number:...")
(Created page with "Category:reaction == Reaction TransportSeed_COB-I-ALAMIN == * direction: ** left-to-right == Reaction formula == * 1.0 COB-I-ALAMIN[e] '''=>''' 1.0 COB-I-ALAMIN[c]...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction PROTOPORGENOXI-RXN ==
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== Reaction TransportSeed_COB-I-ALAMIN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** protoporphyrinogen oxidase, putative chloroplast precursor
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
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* 1.0 [[COB-I-ALAMIN]][e] '''=>''' 1.0 [[COB-I-ALAMIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[Ec-25_003100]]
 
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** Category: [[annotation]]
 
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*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
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*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
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** '''5''' reactions found over '''4''' reactions in the full pathway
 
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* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
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** '''5''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
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* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P50336 P50336]
 
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
 
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
 
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
 
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
 
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** [http://www.uniprot.org/uniprot/P51175 P51175]
 
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** [http://www.uniprot.org/uniprot/O24163 O24163]
 
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** [http://www.uniprot.org/uniprot/O24164 O24164]
 
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** [http://www.uniprot.org/uniprot/O64384 O64384]
 
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** [http://www.uniprot.org/uniprot/O64385 O64385]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=protoporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: nb gene associated=0}}
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{{#set: ec-number=ec-1.3.3.4}}
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{{#set: nb pathway associated=0}}
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{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=manual}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction tool=curation}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
 

Latest revision as of 09:05, 18 March 2021

Reaction TransportSeed_COB-I-ALAMIN

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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