Difference between revisions of "1.2.4.4-RXN"

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(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** glutamate dehydrogenase (nad-dependent) * ec-number: ** [http://e...")
(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** dehydrogenase, e1 component ** branched chain alpha-keto acid dehydrogenase e1 be...")
 
(8 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
+
== Reaction 1.2.4.4-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** glutamate dehydrogenase (nad-dependent)
+
** dehydrogenase, e1 component
 +
** branched chain alpha-keto acid dehydrogenase e1 beta subunit
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-12_008040]]
+
* Gene: [[Ec-06_009010]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[Ec-06_008240]]
+
* Gene: [[Ec-10_006360]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[Ec-06_001980]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
+
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5022]], 4-aminobutanoate degradation V:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR114962
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P20016 P20016]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
** [http://www.uniprot.org/uniprot/P28997 P28997]
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.uniprot.org/uniprot/P41755 P41755]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
−
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
+
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
−
** [http://www.uniprot.org/uniprot/P00365 P00365]
+
** [http://www.uniprot.org/uniprot/P37941 P37941]
−
** [http://www.uniprot.org/uniprot/P93541 P93541]
+
** [http://www.uniprot.org/uniprot/P11178 P11178]
−
** [http://www.uniprot.org/uniprot/P80319 P80319]
+
** [http://www.uniprot.org/uniprot/P12694 P12694]
−
** [http://www.uniprot.org/uniprot/P24295 P24295]
+
** [http://www.uniprot.org/uniprot/P09061 P09061]
−
** [http://www.uniprot.org/uniprot/P27346 P27346]
+
** [http://www.uniprot.org/uniprot/P09060 P09060]
−
** [http://www.uniprot.org/uniprot/P33327 P33327]
+
** [http://www.uniprot.org/uniprot/P11960 P11960]
−
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
+
** [http://www.uniprot.org/uniprot/O84344 O84344]
−
** [http://www.uniprot.org/uniprot/O04937 O04937]
+
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
−
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
+
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
−
** [http://www.uniprot.org/uniprot/O74024 O74024]
+
** [http://www.uniprot.org/uniprot/P35738 P35738]
−
** [http://www.uniprot.org/uniprot/O59650 O59650]
+
** [http://www.uniprot.org/uniprot/P50136 P50136]
 +
** [http://www.uniprot.org/uniprot/O48615 O48615]
 +
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=glutamate dehydrogenase (nad-dependent)}}
+
{{#set: common-name=dehydrogenase, e1 component|branched chain alpha-keto acid dehydrogenase e1 beta subunit}}
−
{{#set: ec-number=ec-1.4.1.2}}
+
{{#set: ec-number=ec-1.2.4.4}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}
+
{{#set: reconstruction source=esiliculosus_genome}}

Latest revision as of 09:05, 18 March 2021

Reaction 1.2.4.4-RXN

  • direction:
    • reversible
  • common-name:
    • dehydrogenase, e1 component
    • branched chain alpha-keto acid dehydrogenase e1 beta subunit
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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