Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:reaction == Reaction METHYLVALERATE-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)...")
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] == Reaction formula == * 1 ER...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLVALERATE-RXN ==
+
== Reaction 2TRANSKETO-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** 3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)
 
−
** dehydrogenase, e1 component
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
+
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MB-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-10_006360]]
+
* Gene: [[Ec-20_002600]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''9''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104869
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21839 P21839]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/P21953 P21953]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/P37940 P37940]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/P37941 P37941]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/P11178 P11178]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/P12694 P12694]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/P09061 P09061]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
** [http://www.uniprot.org/uniprot/P09060 P09060]
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
** [http://www.uniprot.org/uniprot/P11960 P11960]
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
** [http://www.uniprot.org/uniprot/O84344 O84344]
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
−
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
+
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
−
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
+
** [http://www.uniprot.org/uniprot/P45694 P45694]
−
** [http://www.uniprot.org/uniprot/P35738 P35738]
+
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
−
** [http://www.uniprot.org/uniprot/P50136 P50136]
+
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
−
** [http://www.uniprot.org/uniprot/O48615 O48615]
+
** [http://www.uniprot.org/uniprot/P34736 P34736]
−
** [http://www.uniprot.org/uniprot/O03849 O03849]
+
** [http://www.uniprot.org/uniprot/P33315 P33315]
−
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
+
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
−
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
+
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
−
** [http://www.uniprot.org/uniprot/O82450 O82450]
+
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
 +
** [http://www.uniprot.org/uniprot/P46708 P46708]
 +
** [http://www.uniprot.org/uniprot/P75611 P75611]
 +
** [http://www.uniprot.org/uniprot/P73282 P73282]
 +
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
 +
** [http://www.uniprot.org/uniprot/O20250 O20250]
 +
** [http://www.uniprot.org/uniprot/O78327 O78327]
 +
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 +
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 +
** [http://www.uniprot.org/uniprot/P23254 P23254]
 +
** [http://www.uniprot.org/uniprot/P27302 P27302]
 +
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)|dehydrogenase, e1 component}}
+
{{#set: ec-number=ec-2.2.1.1}}
−
{{#set: ec-number=ec-1.2.4.4}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}

Latest revision as of 09:05, 18 March 2021

Reaction 2TRANSKETO-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 13 reactions found over 13 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
    • 5 reactions found over 5 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 9 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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