Difference between revisions of "2TRANSKETO-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase ** beta-ketoacyl synthas...")
 
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] == Reaction formula == * 1 ER...")
 
(10 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
+
== Reaction 2TRANSKETO-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
−
** beta-ketoacyl synthase, n-terminal
 
−
** thiolase-like, subgroup
 
−
** beta-ketoacyl synthase, partial
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[Ec-27_003480]]
+
* Gene: [[Ec-20_002600]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[Ec-12_000650]]
+
*** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[Ec-27_002090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[Ec-12_000640]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''9''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104869
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
** [http://www.uniprot.org/uniprot/P45694 P45694]
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
** [http://www.uniprot.org/uniprot/P34736 P34736]
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
** [http://www.uniprot.org/uniprot/P33315 P33315]
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
+
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
+
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
+
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
+
** [http://www.uniprot.org/uniprot/P46708 P46708]
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
+
** [http://www.uniprot.org/uniprot/P75611 P75611]
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
+
** [http://www.uniprot.org/uniprot/P73282 P73282]
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
+
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
+
** [http://www.uniprot.org/uniprot/O20250 O20250]
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
+
** [http://www.uniprot.org/uniprot/O78327 O78327]
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
+
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
+
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
+
** [http://www.uniprot.org/uniprot/P23254 P23254]
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
+
** [http://www.uniprot.org/uniprot/P27302 P27302]
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
+
** [http://www.uniprot.org/uniprot/P29277 P29277]
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
 
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
 
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=thiolase-like, subgroup|beta-ketoacyl synthase, partial|beta-ketoacyl synthase, n-terminal|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: ec-number=ec-2.2.1.1}}
−
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.41|ec-2.3.1.85}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}}

Latest revision as of 09:05, 18 March 2021

Reaction 2TRANSKETO-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 13 reactions found over 13 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
    • 5 reactions found over 5 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 9 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esilgem/index.php?title=2TRANSKETO-RXN&oldid=90461"