Difference between revisions of "DTDPKIN-RXN"
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(Created page with "Category:reaction == Reaction RXN-11478 == * direction: ** left-to-right * common-name: ** glucose/ribitol dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1...") |
(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction DTDPKIN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** nucleoside diphosphate kinase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[Ec- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[Ec-11_004330]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[Ec-11_005170]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[Ec-26_003930]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[Ec-07_000140]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[Ec-03_001380]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[Ec-22_003280]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[Ec-04_001140]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: |
− | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): | ||
+ | ** '''14''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR101937 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=nucleoside diphosphate kinase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.7.4.6}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=esiliculosus_genome}} | + | {{#set: reconstruction source=esiliculosus_genome|output_pantograph_aragem}} |
Latest revision as of 09:05, 18 March 2021
Contents
Reaction DTDPKIN-RXN
- direction:
- left-to-right
- common-name:
- nucleoside diphosphate kinase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: Ec-11_004330
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: Ec-11_005170
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: Ec-26_003930
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: Ec-07_000140
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: Ec-03_001380
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: Ec-22_003280
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: Ec-04_001140
- Category: annotation
- Source: esiliculosus_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
- 9 reactions found over 9 reactions in the full pathway
- PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
- 14 reactions found over 13 reactions in the full pathway
- PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
- 6 reactions found over 7 reactions in the full pathway
- PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
- 8 reactions found over 8 reactions in the full pathway
- PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
- 4 reactions found over 4 reactions in the full pathway
- PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: esiliculosus_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_aragem; tool: pantograph; comment: n.a
External links