Difference between revisions of "Workflow"

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(Created page with "Category:reaction == Reaction HOMOACONITATE-HYDRATASE-RXN == * direction: ** left-to-right * common-name: ** homoaconitate hydratase * ec-number: ** [http://enzyme.expasy....")
 
(Created page with "Category:reaction == Reaction 2.7.12.1-RXN == * direction: ** reversible * common-name: ** protein serine/threonine/tyrosine kinase * ec-number: ** [http://enzyme.expasy.o...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HOMOACONITATE-HYDRATASE-RXN ==
+
== Reaction 2.7.12.1-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** homoaconitate hydratase
+
** protein serine/threonine/tyrosine kinase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.1.36 ec-4.2.1.36]
+
** [http://enzyme.expasy.org/EC/2.7.11.11 ec-2.7.11.11]
 +
** [http://enzyme.expasy.org/EC/2.7.12.1 ec-2.7.12.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[HOMO-CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[HOMO-I-CIT]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Protein-L-serines]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Protein-Phosphoserines]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[Ec-13_001950]]
+
* Gene: [[Ec-07_001020]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-3081]], L-lysine biosynthesis V:
 
** '''3''' reactions found over '''10''' reactions in the full pathway
 
* [[LYSINE-AMINOAD-PWY]], L-lysine biosynthesis IV:
 
** '''3''' reactions found over '''9''' reactions in the full pathway
 
* [[P241-PWY]], coenzyme B biosynthesis:
 
** '''2''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15488 15488]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04371 R04371]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00162 R00162]
* UNIPROT:
+
{{#set: direction=reversible}}
** [http://www.uniprot.org/uniprot/Q58409 Q58409]
+
{{#set: common-name=protein serine/threonine/tyrosine kinase}}
** [http://www.uniprot.org/uniprot/P49367 P49367]
+
{{#set: ec-number=ec-2.7.11.11|ec-2.7.12.1}}
** [http://www.uniprot.org/uniprot/Q9UT74 Q9UT74]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=homoaconitate hydratase}}
 
{{#set: ec-number=ec-4.2.1.36}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=esiliculosus_genome}}
 
{{#set: reconstruction source=esiliculosus_genome}}

Revision as of 16:28, 6 January 2021

Reaction 2.7.12.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links