Difference between revisions of "Category:Pathway"

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(Created page with "Category:reaction == Reaction HOMOACONITATE-HYDRATASE-RXN == * direction: ** left-to-right * common-name: ** homoaconitate hydratase * ec-number: ** [http://enzyme.expasy....")
(Created page with "{{#ask: Category:pathway | ?common-name | ?nb reaction found | ?nb total reaction | ?completion rate |sort=completion rate, nb total reaction |order=descending }}")
 
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[[Category:reaction]]
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{{#ask: [[Category:pathway]]
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== Reaction HOMOACONITATE-HYDRATASE-RXN ==
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| ?common-name
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* direction:
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| ?nb reaction found
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** left-to-right
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| ?nb total reaction
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* common-name:
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| ?completion rate
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** homoaconitate hydratase
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|sort=completion rate, nb total reaction
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* ec-number:
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|order=descending
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** [http://enzyme.expasy.org/EC/4.2.1.36 ec-4.2.1.36]
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}}
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== Reaction formula ==
 
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* 1 [[HOMO-CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[HOMO-I-CIT]][c]
 
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== Gene(s) associated with this reaction ==
 
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* Gene: [[Ec-13_001950]]
 
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** Category: [[annotation]]
 
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*** Source: [[esiliculosus_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY-3081]], L-lysine biosynthesis V:
 
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** '''3''' reactions found over '''10''' reactions in the full pathway
 
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* [[LYSINE-AMINOAD-PWY]], L-lysine biosynthesis IV:
 
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** '''3''' reactions found over '''9''' reactions in the full pathway
 
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* [[P241-PWY]], coenzyme B biosynthesis:
 
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** '''2''' reactions found over '''16''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[esiliculosus_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15488 15488]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R04371 R04371]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q58409 Q58409]
 
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** [http://www.uniprot.org/uniprot/P49367 P49367]
 
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** [http://www.uniprot.org/uniprot/Q9UT74 Q9UT74]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=homoaconitate hydratase}}
 
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{{#set: ec-number=ec-4.2.1.36}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 09:01, 18 March 2021

 Common-nameNb reaction foundNb total reactionCompletion rate
PWY-5965Fatty acid biosynthesis initiation iii1N.aN.a
PWY-6305Putrescine biosynthesis iv3N.aN.a
PWY-6115Avenacin biosynthesis, initial reactions1N.aN.a
PWY-3221Dtdp-l-rhamnose biosynthesis ii1N.aN.a
PWY0-1534Hydrogen sulfide biosynthesis i1N.aN.a
PWY-5970Fatty acids biosynthesis (yeast)1N.aN.a
PWY-5508Adenosylcobalamin biosynthesis from cobyrinate a,c-diamide ii1N.aN.a
PWY-5664Tetrahydrobiopterin biosynthesis ii2N.aN.a
PWY-82382N.aN.a
PWY-7243Pectin degradation i1N.aN.a
PWY66-422D-galactose degradation v (leloir pathway)5N.aN.a
PWY0-1415Superpathway of heme biosynthesis from uroporphyrinogen-iii4N.aN.a
P224-PWYSulfate reduction v (dissimilatory)2N.aN.a
PWY-7235Superpathway of ubiquinol-6 biosynthesis (eukaryotic)1N.aN.a
PWY-5966Fatty acid biosynthesis initiation ii2N.aN.a
COA-PWY-1Coenzyme a biosynthesis ii (mammalian)414.0
PWY66-4Cholesterol biosynthesis iii (via desmosterol)942.25
PWY-4981L-proline biosynthesis ii (from arginine)422.0
HOMOCYSDEGR-PWYL-cysteine biosynthesis iii (from l-homocysteine)422.0
PWY-7432L-phenylalanine biosynthesis iii (cytosolic, plants)422.0
PWY-3341L-proline biosynthesis iii531.67
PWY-5750Itaconate biosynthesis321.5
PWY-882L-ascorbate biosynthesis i (l-galactose pathway)751.4
LIPAS-PWYTriacylglycerol degradation431.33
PWY-7219Adenosine ribonucleotides de novo biosynthesis431.33
PWY-5913Partial tca cycle (obligate autotrophs)1081.25
PWY-7434Terminal o-glycans residues modification1081.25
PWY-2201Folate transformations i12101.2
PWY-6163Chorismate biosynthesis from 3-dehydroquinate651.2
PWY-6823Molybdenum cofactor biosynthesis761.17
PWY-6969Tca cycle v (2-oxoglutarate:ferredoxin oxidoreductase)1091.11
GLYSYN-THR-PWYGlycine biosynthesis iv111.0
PWY-6759Hydrogen production iii111.0
PWY-4921Protein citrullination111.0
PWY0-541Cyclopropane fatty acid (cfa) biosynthesis111.0
PWY-6785Hydrogen production viii111.0
ASPARAGINESYN-PWYL-asparagine biosynthesis ii111.0
GLYCOLYSIS-TCA-GLYOX-BYPASSSuperpathway of glycolysis, pyruvate dehydrogenase, tca, and glyoxylate bypass111.0
PWY-7183Pyrimidine nucleobases salvage i111.0
PWY-6898Thiamine salvage iii111.0
PWY-5490Paraoxon degradation111.0
PWY-5120Geranylgeranyl diphosphate biosynthesis111.0
PHENYLALANINE-DEG1-PWYL-phenylalanine degradation i (aerobic)111.0
PWY-5350Thiosulfate disproportionation iii (rhodanese)111.0
PWY-7583Arachidonate biosynthesis ii (bacteria)111.0
GLUTAMATE-DEG1-PWYL-glutamate degradation i111.0
PWY-5481Pyruvate fermentation to lactate111.0
MANNIDEG-PWYMannitol degradation i111.0
PWY0-1021L-alanine biosynthesis iii111.0
PWY-6520Nonaprenyl diphosphate biosynthesis ii111.0
... further results

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