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fwgem description[edit]
This page presents a multispecies comparison of metabolism among Ectocarpales sequenced with long reads in the Phaeoexplorer project. It has been designed specifically to look for adaptations to freshwater in the brackish species Porterinema fluviatile and the strictly freshwater species Pleurocladia lacustris.
This version contains 10 algae and 2 outgroup species for which genomes were sequenced with long reads.
Automatic reconstruction with AuCoMe[edit]
Genome-scale metabolic networks for the algae were inferred using the AuCoMe program, as described in Belcour et al., 2023. The following table gives direct access to the individual summary table below for numbers of genes and reactions. You can also browse the wiki using the Metacyc IDs of individual enzymes, metabolites or reactions, and you will see in which cases gene-protein-reaction association were found across all species.
Description of the 12 species[edit]
- Six species are marine Ectocarpales:
| Organism | Models |
|---|---|
| Ectocarpus crouaniorum | sbml |
| Ectocarpus fasciculatus | sbml |
| Ectocarpus siliculosus 1a | sbml |
| Ectocarpus sp. 6 | sbml |
| Chordaria linearis | sbml |
| Scytosiphon promiscuus | sbml |
- Two species are brackish or freshwater Ectocarpales:
| Organism | Models |
|---|---|
| Porterinema fluviatile (brackish) | sbml |
| Pleurocladia lacustris (freshwater) | sbml |
- Two species are other brown algae (Fucales)
| Organism | Models |
|---|---|
| Ascophyllum nodosum | sbml |
| Fucus serratus | sbml |
- Two species are outgroups:
| Organism | Models |
|---|---|
| Heterosigma akashiwo | sbml |
| Schizocladia ischiensis | sbml |
Collaborative curation[edit]
Curation based on expert analysis of some gene families is always very welcome, using the procedure described below.
