PWY-6442

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus subulatus strain BFT results to a Genome scale Model containing 2086 reactions, 2204 metabolites, 5052 genes and 1152 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Creation of a metabolic network containing 1459 reactions
• Based on expertise:
  • 480 reaction(s) added
• Based on orthology data:
  • Creation of a global metabolic network containing 417 reactions
    • From template a.taliana.aragem creation of a metabolic network containing: 417 reactions

• List of tools used:
  • Tool: PathwayTools

• • Tool: Pantograph

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme[AT]inria.fr