Difference between revisions of "DEOXYGUANPHOSPHOR-RXN"

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(Created page with "Category:reaction == Reaction RXN0-4022 == * ec-number: ** [http://enzyme.expasy.org/EC/1.7.1.13 ec-1.7.1.13] * direction: ** left-to-right * common-name: ** nadph-depende...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTDEHYD-RXN ==
+
== Reaction RXN0-4022 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4]
+
** [http://enzyme.expasy.org/EC/1.7.1.13 ec-1.7.1.13]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nadph-dependent glutamate synthase
+
** nadph-dependent 7-cyano-7-deazaguanine reductase quef
−
** nadp-specific glutamate dehydrogenase
 
−
** glutamate synthase large subunit
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[7-CYANO-7-DEAZAGUANINE]][c] '''+''' 2 [[NADPH]][c] '''+''' 3 [[PROTON]][c] '''=>''' 1 [[7-AMINOMETHYL-7-DEAZAGUANINE]][c] '''+''' 2 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FISUC_RS11590]]
−
* Gene: [[FSU_RS11005]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS06385]]
+
* Gene: [[FSU_RS13560]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS14130]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS09065]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS04495]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS00325]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III:
+
* [[PWY-6700]], queuosine biosynthesis:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5675]], nitrate reduction V (assimilatory):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY490-3]], nitrate reduction VI (assimilatory):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13411 13411]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07605 R07605]
−
* UNIPROT:
+
{{#set: ec-number=ec-1.7.1.13}}
−
** [http://www.uniprot.org/uniprot/P07262 P07262]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P15111 P15111]
+
{{#set: common-name=nadph-dependent 7-cyano-7-deazaguanine reductase quef}}
−
** [http://www.uniprot.org/uniprot/P28724 P28724]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P43793 P43793]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
 
−
** [http://www.uniprot.org/uniprot/P00370 P00370]
 
−
** [http://www.uniprot.org/uniprot/P00369 P00369]
 
−
** [http://www.uniprot.org/uniprot/P29507 P29507]
 
−
** [http://www.uniprot.org/uniprot/P28998 P28998]
 
−
** [http://www.uniprot.org/uniprot/P29051 P29051]
 
−
** [http://www.uniprot.org/uniprot/P31026 P31026]
 
−
** [http://www.uniprot.org/uniprot/P39475 P39475]
 
−
** [http://www.uniprot.org/uniprot/P39708 P39708]
 
−
** [http://www.uniprot.org/uniprot/P54387 P54387]
 
−
** [http://www.uniprot.org/uniprot/P54386 P54386]
 
−
** [http://www.uniprot.org/uniprot/P95544 P95544]
 
−
** [http://www.uniprot.org/uniprot/P78804 P78804]
 
−
</div>
 
−
{{#set: ec-number=ec-1.4.1.4}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=nadp-specific glutamate dehydrogenase|glutamate synthase large subunit|nadph-dependent glutamate synthase}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=4}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=faecalibacterium|bifidobacterium|ecoli|genome|plantarum|bthetaiotaomicron}}
+
{{#set: reconstruction source=ecoli|genome}}

Revision as of 21:59, 24 July 2020

Reaction RXN0-4022

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nadph-dependent 7-cyano-7-deazaguanine reductase quef

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6700, queuosine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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