Difference between revisions of "FSU RS13520"

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(Created page with "Category:reaction == Reaction LEUCINE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.4 ec-6.1.1.4] * direction: ** left-to-right * common-name: **...")
 
(Created page with "Category:reaction == Reaction PEPTIDYLPROLYL-ISOMERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.2.1.8 ec-5.2.1.8] * direction: ** reversible * common-name: **...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LEUCINE--TRNA-LIGASE-RXN ==
+
== Reaction PEPTIDYLPROLYL-ISOMERASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.4 ec-6.1.1.4]
+
** [http://enzyme.expasy.org/EC/5.2.1.8 ec-5.2.1.8]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** leucine--trna ligase
+
** fkbp-type peptidyl-prolyl cis-trans isomerase
 +
** peptidylprolyl isomerase
 +
** peptidyl-prolyl cis-trans isomerase
 +
** trigger factor
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[LEU]][c] '''+''' 1 [[LEU-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-8624]][c] '''<=>''' 1 [[CPD-8625]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS05785]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FISUC_RS13835]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS01135]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS00065]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS00025]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS06255]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS01985]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS04475]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS00365]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS08835]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS07685]]
+
* Gene: [[FSU_RS09450]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS10710]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS03175]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS02585]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS00115]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS04365]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS06925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS14170]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01295]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS08770]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS07525]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS14945]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS13875]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''20''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
Line 24: Line 87:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11689 11689]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16240 16240]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04273 R04273]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O27552 O27552]
+
** [http://www.uniprot.org/uniprot/P20081 P20081]
−
** [http://www.uniprot.org/uniprot/P56457 P56457]
+
** [http://www.uniprot.org/uniprot/P62942 P62942]
−
** [http://www.uniprot.org/uniprot/O51267 O51267]
+
** [http://www.uniprot.org/uniprot/P30412 P30412]
−
** [http://www.uniprot.org/uniprot/O83595 O83595]
+
** [http://www.uniprot.org/uniprot/P24367 P24367]
−
** [http://www.uniprot.org/uniprot/O84211 O84211]
+
** [http://www.uniprot.org/uniprot/P30405 P30405]
−
** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
+
** [http://www.uniprot.org/uniprot/P28725 P28725]
−
** [http://www.uniprot.org/uniprot/P47508 P47508]
+
** [http://www.uniprot.org/uniprot/P14088 P14088]
−
** [http://www.uniprot.org/uniprot/P36430 P36430]
+
** [http://www.uniprot.org/uniprot/Q08752 Q08752]
−
** [http://www.uniprot.org/uniprot/O66680 O66680]
+
** [http://www.uniprot.org/uniprot/Q26994 Q26994]
−
** [http://www.uniprot.org/uniprot/O67646 O67646]
+
** [http://www.uniprot.org/uniprot/P45877 P45877]
−
** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
+
** [http://www.uniprot.org/uniprot/Q9DCY1 Q9DCY1]
−
** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
+
** [http://www.uniprot.org/uniprot/P18203 P18203]
−
** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
+
** [http://www.uniprot.org/uniprot/O25982 O25982]
−
** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
+
** [http://www.uniprot.org/uniprot/O66105 O66105]
−
** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
+
** [http://www.uniprot.org/uniprot/Q9ZL49 Q9ZL49]
−
** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
+
** [http://www.uniprot.org/uniprot/P25007 P25007]
−
** [http://www.uniprot.org/uniprot/P43827 P43827]
+
** [http://www.uniprot.org/uniprot/Q9UDK1 Q9UDK1]
−
** [http://www.uniprot.org/uniprot/O58698 O58698]
+
** [http://www.uniprot.org/uniprot/P34791 P34791]
−
** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
+
** [http://www.uniprot.org/uniprot/Q9ZCB7 Q9ZCB7]
−
** [http://www.uniprot.org/uniprot/P26637 P26637]
+
** [http://www.uniprot.org/uniprot/P44837 P44837]
−
** [http://www.uniprot.org/uniprot/P75398 P75398]
+
** [http://www.uniprot.org/uniprot/P47480 P47480]
−
** [http://www.uniprot.org/uniprot/P73274 P73274]
+
** [http://www.uniprot.org/uniprot/P56420 P56420]
−
** [http://www.uniprot.org/uniprot/Q48955 Q48955]
+
** [http://www.uniprot.org/uniprot/P62935 P62935]
−
** [http://www.uniprot.org/uniprot/Q48964 Q48964]
+
** [http://www.uniprot.org/uniprot/P14832 P14832]
−
** [http://www.uniprot.org/uniprot/Q49051 Q49051]
+
** [http://www.uniprot.org/uniprot/P25334 P25334]
−
** [http://www.uniprot.org/uniprot/P11325 P11325]
+
** [http://www.uniprot.org/uniprot/P22011 P22011]
−
** [http://www.uniprot.org/uniprot/P07813 P07813]
+
** [http://www.uniprot.org/uniprot/P0AFL3 P0AFL3]
−
** [http://www.uniprot.org/uniprot/P10857 P10857]
+
** [http://www.uniprot.org/uniprot/P23869 P23869]
−
** [http://www.uniprot.org/uniprot/P15181 P15181]
+
** [http://www.uniprot.org/uniprot/P62937 P62937]
−
** [http://www.uniprot.org/uniprot/Q50192 Q50192]
+
** [http://www.uniprot.org/uniprot/P23284 P23284]
 +
** [http://www.uniprot.org/uniprot/P17742 P17742]
 +
** [http://www.uniprot.org/uniprot/P10255 P10255]
 +
** [http://www.uniprot.org/uniprot/P62936 P62936]
 +
** [http://www.uniprot.org/uniprot/P24525 P24525]
 +
** [http://www.uniprot.org/uniprot/P10111 P10111]
 +
** [http://www.uniprot.org/uniprot/P21568 P21568]
 +
** [http://www.uniprot.org/uniprot/P29820 P29820]
 +
** [http://www.uniprot.org/uniprot/P21569 P21569]
 +
** [http://www.uniprot.org/uniprot/P18253 P18253]
 +
** [http://www.uniprot.org/uniprot/P15425 P15425]
 +
** [http://www.uniprot.org/uniprot/P44499 P44499]
 +
** [http://www.uniprot.org/uniprot/P44830 P44830]
 +
** [http://www.uniprot.org/uniprot/P0A850 P0A850]
 +
** [http://www.uniprot.org/uniprot/Q9ZJH5 Q9ZJH5]
 +
** [http://www.uniprot.org/uniprot/P0ABZ6 P0ABZ6]
 +
** [http://www.uniprot.org/uniprot/Q9RXR9 Q9RXR9]
 +
** [http://www.uniprot.org/uniprot/Q9PNC4 Q9PNC4]
 +
** [http://www.uniprot.org/uniprot/P56989 P56989]
 +
** [http://www.uniprot.org/uniprot/P80698 P80698]
 +
** [http://www.uniprot.org/uniprot/Q9RRF0 Q9RRF0]
 +
** [http://www.uniprot.org/uniprot/Q9JQS5 Q9JQS5]
 +
** [http://www.uniprot.org/uniprot/Q57726 Q57726]
 +
** [http://www.uniprot.org/uniprot/P65762 P65762]
 +
** [http://www.uniprot.org/uniprot/O27393 O27393]
 +
** [http://www.uniprot.org/uniprot/Q9JZ74 Q9JZ74]
 +
** [http://www.uniprot.org/uniprot/Q46108 Q46108]
 +
** [http://www.uniprot.org/uniprot/Q9JU68 Q9JU68]
 +
** [http://www.uniprot.org/uniprot/Q9JUB5 Q9JUB5]
 +
** [http://www.uniprot.org/uniprot/P42458 P42458]
 +
** [http://www.uniprot.org/uniprot/P68106 P68106]
 +
** [http://www.uniprot.org/uniprot/Q9QUR7 Q9QUR7]
 +
** [http://www.uniprot.org/uniprot/P0AEM0 P0AEM0]
 +
** [http://www.uniprot.org/uniprot/Q00688 Q00688]
 +
** [http://www.uniprot.org/uniprot/Q7M511 Q7M511]
 +
** [http://www.uniprot.org/uniprot/P30404 P30404]
 +
** [http://www.uniprot.org/uniprot/Q7M541 Q7M541]
 +
** [http://www.uniprot.org/uniprot/P23285 P23285]
 +
** [http://www.uniprot.org/uniprot/P35627 P35627]
 +
** [http://www.uniprot.org/uniprot/P29117 P29117]
 +
** [http://www.uniprot.org/uniprot/P32472 P32472]
 +
** [http://www.uniprot.org/uniprot/Q06118 Q06118]
 +
** [http://www.uniprot.org/uniprot/P25719 P25719]
 +
** [http://www.uniprot.org/uniprot/P35176 P35176]
 +
** [http://www.uniprot.org/uniprot/Q40493 Q40493]
 +
** [http://www.uniprot.org/uniprot/P35137 P35137]
 +
** [http://www.uniprot.org/uniprot/Q53919 Q53919]
 +
** [http://www.uniprot.org/uniprot/Q40673 Q40673]
 +
** [http://www.uniprot.org/uniprot/Q40672 Q40672]
 +
** [http://www.uniprot.org/uniprot/P38911 P38911]
 +
** [http://www.uniprot.org/uniprot/P0A9L5 P0A9L5]
 +
** [http://www.uniprot.org/uniprot/Q48822 Q48822]
 +
** [http://www.uniprot.org/uniprot/Q42406 Q42406]
 +
** [http://www.uniprot.org/uniprot/P42693 P42693]
 +
** [http://www.uniprot.org/uniprot/Q99008 Q99008]
 +
** [http://www.uniprot.org/uniprot/Q8IIK8 Q8IIK8]
 +
** [http://www.uniprot.org/uniprot/Q27745 Q27745]
 +
** [http://www.uniprot.org/uniprot/Q41119 Q41119]
 +
** [http://www.uniprot.org/uniprot/Q43207 Q43207]
 +
** [http://www.uniprot.org/uniprot/Q06205 Q06205]
 +
** [http://www.uniprot.org/uniprot/Q8XCI0 Q8XCI0]
 +
** [http://www.uniprot.org/uniprot/P54985 P54985]
 +
** [http://www.uniprot.org/uniprot/Q9UNP9 Q9UNP9]
 +
** [http://www.uniprot.org/uniprot/Q7M0B2 Q7M0B2]
 +
** [http://www.uniprot.org/uniprot/Q10724 Q10724]
 +
** [http://www.uniprot.org/uniprot/Q38900 Q38900]
 +
** [http://www.uniprot.org/uniprot/Q38936 Q38936]
 +
** [http://www.uniprot.org/uniprot/Q38931 Q38931]
 +
** [http://www.uniprot.org/uniprot/P75454 P75454]
 +
** [http://www.uniprot.org/uniprot/P73789 P73789]
 +
** [http://www.uniprot.org/uniprot/Q8LDP4 Q8LDP4]
 +
** [http://www.uniprot.org/uniprot/Q25340 Q25340]
 +
** [http://www.uniprot.org/uniprot/O68129 O68129]
 +
** [http://www.uniprot.org/uniprot/O49605 O49605]
 +
** [http://www.uniprot.org/uniprot/P34790 P34790]
 +
** [http://www.uniprot.org/uniprot/O04843 O04843]
 +
** [http://www.uniprot.org/uniprot/O65104 O65104]
 +
** [http://www.uniprot.org/uniprot/Q39613 Q39613]
 +
** [http://www.uniprot.org/uniprot/Q41649 Q41649]
 +
** [http://www.uniprot.org/uniprot/Q41651 Q41651]
 +
** [http://www.uniprot.org/uniprot/P52014 P52014]
 +
** [http://www.uniprot.org/uniprot/P52017 P52017]
 +
** [http://www.uniprot.org/uniprot/P52018 P52018]
 +
** [http://www.uniprot.org/uniprot/P52013 P52013]
 +
** [http://www.uniprot.org/uniprot/Q9XXI7 Q9XXI7]
 +
** [http://www.uniprot.org/uniprot/P52009 P52009]
 +
** [http://www.uniprot.org/uniprot/P52015 P52015]
 +
** [http://www.uniprot.org/uniprot/P52011 P52011]
 +
** [http://www.uniprot.org/uniprot/Q18445 Q18445]
 +
** [http://www.uniprot.org/uniprot/O54168 O54168]
 +
** [http://www.uniprot.org/uniprot/Q9XA08 Q9XA08]
 +
** [http://www.uniprot.org/uniprot/P87051 P87051]
 +
** [http://www.uniprot.org/uniprot/O74729 O74729]
 +
** [http://www.uniprot.org/uniprot/O94273 O94273]
 +
** [http://www.uniprot.org/uniprot/O50586 O50586]
 +
** [http://www.uniprot.org/uniprot/O93778 O93778]
 +
** [http://www.uniprot.org/uniprot/Q38867 Q38867]
 +
** [http://www.uniprot.org/uniprot/Q9LY53 Q9LY53]
 +
** [http://www.uniprot.org/uniprot/Q96416 Q96416]
 +
** [http://www.uniprot.org/uniprot/Q96417 Q96417]
 +
** [http://www.uniprot.org/uniprot/O64456 O64456]
 +
** [http://www.uniprot.org/uniprot/Q9XF12 Q9XF12]
 +
** [http://www.uniprot.org/uniprot/Q9SKQ0 Q9SKQ0]
 +
** [http://www.uniprot.org/uniprot/Q9SP02 Q9SP02]
 +
** [http://www.uniprot.org/uniprot/P77949 P77949]
 +
** [http://www.uniprot.org/uniprot/O23727 O23727]
 
</div>
 
</div>
−
{{#set: ec-number=ec-6.1.1.4}}
+
{{#set: ec-number=ec-5.2.1.8}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=leucine--trna ligase}}
+
{{#set: common-name=fkbp-type peptidyl-prolyl cis-trans isomerase|peptidylprolyl isomerase|trigger factor|peptidyl-prolyl cis-trans isomerase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=22}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=genome}}
 
{{#set: reconstruction source=genome}}

Revision as of 22:01, 24 July 2020

Reaction PEPTIDYLPROLYL-ISOMERASE-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • fkbp-type peptidyl-prolyl cis-trans isomerase
    • peptidylprolyl isomerase
    • peptidyl-prolyl cis-trans isomerase
    • trigger factor

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13520&oldid=12156"