Difference between revisions of "FSU RS03125"

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(Created page with "Category:reaction == Reaction RXN-14281 == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.20 ec-3.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 MA...")
 
(Created page with "Category:reaction == Reaction PSERTRANSAMPYR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] * direction: ** reversible * common-name: ** 3-phosp...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14281 ==
+
== Reaction PSERTRANSAMPYR-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.20 ec-3.2.1.20]
+
** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** 3-phosphoserine/phosphohydroxythreonine transaminase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALTOPENTAOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[MALTOTETRAOSE]][c]
+
* 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06195]]
+
* Gene: [[FSU_RS04780]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[reactions_add_43_emile_ortho_meta]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the orthology part of the emile network.
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS02890]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_43_emile_ortho_meta]]; tool: [[curation]]; comment: present in the orthology part of the emile network.
+
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-3.2.1.20}}
+
* RHEA:
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16576 16576]
−
{{#set: nb gene associated=1}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
−
{{#set: reconstruction category=manual}}
+
{{#set: ec-number=ec-2.6.1.52}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction comment=present in the orthology part of the emile network.}}
+
{{#set: common-name=3-phosphoserine/phosphohydroxythreonine transaminase}}
−
{{#set: reconstruction source=reactions_add_43_emile_ortho_meta}}
+
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome|ecoli|bthetaiotaomicron|faecalibacterium|bifidobacterium}}

Revision as of 22:05, 24 July 2020

Reaction PSERTRANSAMPYR-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • 3-phosphoserine/phosphohydroxythreonine transaminase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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