Difference between revisions of "RXN0-383"

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(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13] * direction: ** left-to-right * common-name: ** methi...")
(Created page with "Category:reaction == Reaction KDOTRANS2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.99.13 ec-2.4.99.13] * direction: ** left-to-right == Reaction formula == *...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HOMOCYSMETB12-RXN ==
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== Reaction KDOTRANS2-RXN ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
+
** [http://enzyme.expasy.org/EC/2.4.99.13 ec-2.4.99.13]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** methionine synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
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* 1 [[CMP-KDO]][c] '''+''' 1 [[KDO-LIPID-IVA]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[KDO2-LIPID-IVA]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS07715]]
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* Gene: [[FSU_RS11670]]
** Category: [[annotation]]
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** Category: [[manual]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[reactions_add_43_emile_ortho_meta]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the orthology part of the emile network.
* Gene: [[FISUC_RS05815]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
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* [[KDOSYN-PWY]], Kdo transfer to lipid IVA I:
** '''8''' reactions found over '''9''' reactions in the full pathway
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** '''2''' reactions found over '''2''' reactions in the full pathway
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-2201]], folate transformations I:
 
** '''7''' reactions found over '''12''' reactions in the full pathway
 
* [[PWY-3841]], folate transformations II:
 
** '''8''' reactions found over '''11''' reactions in the full pathway
 
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-7977]], L-methionine biosynthesis IV (archaea):
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 
** '''3''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_43_emile_ortho_meta]]; tool: [[curation]]; comment: present in the orthology part of the emile network.
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28063 28063]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
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** [http://www.genome.jp/dbget-bin/www_bget?R05074 R05074]
* UNIPROT:
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{{#set: ec-number=ec-2.4.99.13}}
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 
** [http://www.uniprot.org/uniprot/O33259 O33259]
 
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 
** [http://www.uniprot.org/uniprot/P13009 P13009]
 
{{#set: ec-number=ec-2.1.1.13}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=methionine synthase}}
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{{#set: nb gene associated=1}}
{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=1}}
{{#set: nb pathway associated=7}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=present in the orthology part of the emile network.}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_43_emile_ortho_meta}}
{{#set: reconstruction source=genome}}
 

Revision as of 09:59, 27 August 2020

Reaction KDOTRANS2-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • KDOSYN-PWY, Kdo transfer to lipid IVA I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links