Difference between revisions of "CITSYN-RXN"

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(Created page with "Category:reaction == Reaction ENTF-RXN == * direction: ** left-to-right == Reaction formula == * 1 ATP[c] '''+''' 1 PROTON[c] '''+''' 1 SER[c] '''=>''' 1 PPI...")
(Created page with "Category:reaction == Reaction RXN0-724 == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.98.6 ec-1.1.98.6] * direction: ** left-to-right * common-name: ** anaerobic ribo...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ENTF-RXN ==
+
== Reaction RXN0-724 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.98.6 ec-1.1.98.6]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** anaerobic ribonucleoside-triphosphate reductase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[SERYL-AMP]][c]
+
* 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UTP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DUTP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS14220]]
+
* Gene: [[FISUC_RS10855]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[reactions_add_43_emile_ortho_meta]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the orthology part of the emile network.
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS02335]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS00460]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7751]], shinorine biosynthesis:
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[ENTBACSYN-PWY]], enterobactin biosynthesis:
+
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7987]], vanchrobactin biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_43_emile_ortho_meta]]; tool: [[curation]]; comment: present in the orthology part of the emile network.
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28573 28573]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51629 51629]
 +
{{#set: ec-number=ec-1.1.98.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=anaerobic ribonucleoside-triphosphate reductase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=present in the orthology part of the emile network.}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=reactions_add_43_emile_ortho_meta}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome}}

Revision as of 09:59, 27 August 2020

Reaction RXN0-724

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • anaerobic ribonucleoside-triphosphate reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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