Difference between revisions of "FSU RS00290"

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(Created page with "Category:reaction == Reaction 3.1.21.2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.21.2 ec-3.1.21.2] * direction: ** left-to-right * common-name: ** deoxyribon...")
(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95] * direction: ** reversible * common-name: ** phosphog...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.21.2-RXN ==
+
== Reaction PGLYCDEHYDROG-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.21.2 ec-3.1.21.2]
+
** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** deoxyribonuclease iv
+
** phosphoglycerate dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Single-Stranded-DNAs]][c] '''+''' n [[WATER]][c] '''=>''' n [[5-phosphooligonucleotides]][c]
+
* 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS11980]]
+
* Gene: [[FSU_RS14010]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS13945]]
+
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS12040]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS15335]]
 +
** Category: [[orthology]]
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-8010]], L-cysteine biosynthesis IX (Trichomonas vaginalis):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[SERSYN-PWY]], L-serine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A6C1 P0A6C1]
+
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
−
{{#set: ec-number=ec-3.1.21.2}}
+
** [http://www.uniprot.org/uniprot/P43885 P43885]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P35136 P35136]
−
{{#set: common-name=deoxyribonuclease iv}}
+
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P40510 P40510]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P40054 P40054]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/O49485 O49485]
 +
** [http://www.uniprot.org/uniprot/P87228 P87228]
 +
** [http://www.uniprot.org/uniprot/O04130 O04130]
 +
{{#set: ec-number=ec-1.1.1.95}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphoglycerate dehydrogenase}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bifidobacterium|genome|plantarum|ecoli}}

Revision as of 10:06, 27 August 2020

Reaction PGLYCDEHYDROG-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • phosphoglycerate dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-8010, L-cysteine biosynthesis IX (Trichomonas vaginalis):
    • 2 reactions found over 3 reactions in the full pathway
  • SERSYN-PWY, L-serine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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