Difference between revisions of "FISUC RS11670"
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(Created page with "Category:reaction == Reaction RXN-16631 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59] * direction: ** left-to-right * common-name: ** 3-hydroxyacyl...") |
(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction DUDPKIN-RXN == |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** nucleoside-diphosphate kinase |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[FSU_RS15240]] |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[FSU_RS14500]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| − | * Gene: [[ | + | ** Category: [[orthology]] |
| + | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[FISUC_RS12530]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): |
| − | ** ''' | + | ** '''10''' reactions found over '''13''' reactions in the full pathway |
| + | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: | ||
| + | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: ec-number=ec- | + | * RHEA: |
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28583 28583] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331] | ||
| + | {{#set: ec-number=ec-2.7.4.6}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=nucleoside-diphosphate kinase}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}} |
Revision as of 10:07, 27 August 2020
Contents
Reaction DUDPKIN-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- nucleoside-diphosphate kinase
Reaction formula
Gene(s) associated with this reaction
- Gene: FSU_RS15240
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FSU_RS14500
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: FISUC_RS12530
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
- 10 reactions found over 13 reactions in the full pathway
- PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
- 6 reactions found over 9 reactions in the full pathway
- PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
External links
