Difference between revisions of "1.2.7.8-RXN"

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(Created page with "Category:reaction == Reaction PYRDAMPTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.54 ec-2.6.1.54] * direction: ** reversible == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction RXN-7913 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25] ** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14] ** [http...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRDAMPTRANS-RXN ==
+
== Reaction RXN-7913 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.54 ec-2.6.1.54]
+
** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25]
 +
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** (d)cmp kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c] '''<=>''' 1 [[D-GLT]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FISUC_RS03760]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS05650]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS13255]]
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15880 15880]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25095 25095]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01580 R01580]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
−
{{#set: ec-number=ec-2.6.1.54}}
+
{{#set: ec-number=ec-2.7.4.25|ec-2.7.4.13|ec-2.7.4.14}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=(d)cmp kinase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
−
{{#set: reconstruction source=reactions_add_gp}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}

Revision as of 10:06, 10 September 2020

Reaction RXN-7913

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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