Difference between revisions of "FSU RS04640"

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(Created page with "Category:reaction == Reaction Export_NAD == * direction: ** left-to-right == Reaction formula == * 1.0 NAD[c] '''=>''' 1.0 NAD[C-BOUNDARY] == Gene(s) associated wi...")
(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] * direction: ** reversible * common-name: ** diaminopi...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction Export_NAD ==
+
== Reaction DIAMINOPIMEPIM-RXN ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** diaminopimelate epimerase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[NAD]][c] '''=>''' 1.0 [[NAD]][C-BOUNDARY]
+
* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS10985]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS09045]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_export]]; tool: [[curation]]; comment: avoid storage
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=manual}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
−
{{#set: reconstruction tool=curation}}
+
* UNIPROT:
−
{{#set: reconstruction comment=avoid storage}}
+
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
−
{{#set: reconstruction source=reactions_export}}
+
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
 +
** [http://www.uniprot.org/uniprot/P44859 P44859]
 +
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
 +
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 +
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 +
** [http://www.uniprot.org/uniprot/P46814 P46814]
 +
** [http://www.uniprot.org/uniprot/O05322 O05322]
 +
{{#set: ec-number=ec-5.1.1.7}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=diaminopimelate epimerase}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}

Revision as of 10:11, 10 September 2020

Reaction DIAMINOPIMEPIM-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • diaminopimelate epimerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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