Difference between revisions of "FSU RS05440"

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(Created page with "Category:reaction == Reaction AICARSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2] * direction: ** reversible * common-name: ** adenylosuccinat...")
(Created page with "Category:reaction == Reaction PYRIDOXKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35] * direction: ** left-to-right * common-name: ** pyridoxa...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AICARSYN-RXN ==
+
== Reaction PYRIDOXKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
+
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** adenylosuccinate lyase
+
** pyridoxamine kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAL]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00540]]
+
* Gene: [[FSU_RS08635]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS14350]]
+
* Gene: [[FISUC_RS06730]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III:
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I:
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23923 23923]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10225 10225]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04559 R04559]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00174 R00174]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21265 P21265]
+
** [http://www.uniprot.org/uniprot/Q7M2L1 Q7M2L1]
−
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
+
** [http://www.uniprot.org/uniprot/P44690 P44690]
−
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
+
** [http://www.uniprot.org/uniprot/P77150 P77150]
−
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
+
{{#set: ec-number=ec-2.7.1.35}}
−
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
+
{{#set: common-name=pyridoxamine kinase}}
−
** [http://www.uniprot.org/uniprot/O65180 O65180]
 
−
** [http://www.uniprot.org/uniprot/P12047 P12047]
 
−
{{#set: ec-number=ec-4.3.2.2}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=adenylosuccinate lyase}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=faecalibacterium|genome|plantarum}}
+
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|genome|faecalibacterium|plantarum}}

Revision as of 10:12, 10 September 2020

Reaction PYRIDOXKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • pyridoxamine kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 4 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast):
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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