Difference between revisions of "FSU RS03125"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction GLYRIBONUCSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13] * direction: ** left-to-right * common-name: ** phosp...")
(Created page with "Category:reaction == Reaction 2.5.1.19-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19] * direction: ** reversible * common-name: ** 3-phosphoshik...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYRIBONUCSYN-RXN ==
+
== Reaction 2.5.1.19-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13]
+
** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphoribosylamine--glycine ligase
+
** 3-phosphoshikimate 1-carboxyvinyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS11270]]
+
* Gene: [[FSU_RS14855]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS08110]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS12880]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS10040]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS09330]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''7''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07244 P07244]
+
** [http://www.uniprot.org/uniprot/P22299 P22299]
−
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/P12039 P12039]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
+
** [http://www.uniprot.org/uniprot/P22487 P22487]
−
** [http://www.uniprot.org/uniprot/P15640 P15640]
+
** [http://www.uniprot.org/uniprot/P52312 P52312]
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
+
** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3]
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
+
** [http://www.uniprot.org/uniprot/Q03421 Q03421]
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
+
** [http://www.uniprot.org/uniprot/P19786 P19786]
−
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
+
** [http://www.uniprot.org/uniprot/P17688 P17688]
−
** [http://www.uniprot.org/uniprot/P43845 P43845]
+
** [http://www.uniprot.org/uniprot/P24497 P24497]
−
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
+
** [http://www.uniprot.org/uniprot/P23981 P23981]
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
+
** [http://www.uniprot.org/uniprot/P23281 P23281]
−
** [http://www.uniprot.org/uniprot/P20772 P20772]
+
** [http://www.uniprot.org/uniprot/Q04570 Q04570]
−
** [http://www.uniprot.org/uniprot/P26977 P26977]
+
** [http://www.uniprot.org/uniprot/P43905 P43905]
−
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
+
** [http://www.uniprot.org/uniprot/Q59975 Q59975]
−
** [http://www.uniprot.org/uniprot/P74232 P74232]
+
** [http://www.uniprot.org/uniprot/P12421 P12421]
−
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
+
** [http://www.uniprot.org/uniprot/P07637 P07637]
−
** [http://www.uniprot.org/uniprot/P52421 P52421]
+
** [http://www.uniprot.org/uniprot/P19688 P19688]
 +
** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3]
 +
** [http://www.uniprot.org/uniprot/P11043 P11043]
 
</div>
 
</div>
−
{{#set: ec-number=ec-6.3.4.13}}
+
{{#set: ec-number=ec-2.5.1.19}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=phosphoribosylamine--glycine ligase}}
+
{{#set: common-name=3-phosphoshikimate 1-carboxyvinyltransferase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|ecoli|plantarum|genome}}
+
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}

Revision as of 10:13, 10 September 2020

Reaction 2.5.1.19-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • 3-phosphoshikimate 1-carboxyvinyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS03125&oldid=23585"