Difference between revisions of "FSU RS05830"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6] ** [http://enzyme.expasy.org/EC/2.6.1....")
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN ==
+
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
−
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** branched-chain amino acid aminotransferase
+
** beta-ketoacyl-acp synthase ii
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LEU]][c] '''<=>''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS03245]]
+
* Gene: [[FSU_RS01605]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS05135]]
+
* Gene: [[FSU_RS01400]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS15210]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS15410]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I:
+
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5076]], L-leucine degradation III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7767]], L-leucine degradation IV (Stickland reaction):
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18324 18324]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
** [http://www.uniprot.org/uniprot/P23902 P23902]
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
** [http://www.uniprot.org/uniprot/P43710 P43710]
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
** [http://www.uniprot.org/uniprot/O67612 O67612]
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
** [http://www.uniprot.org/uniprot/P20582 P20582]
−
{{#set: ec-number=ec-2.6.1.6|ec-2.6.1.42}}
+
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
−
{{#set: common-name=branched-chain amino acid aminotransferase}}
+
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/P43711 P43711]
−
{{#set: nb pathway associated=4}}
+
** [http://www.uniprot.org/uniprot/O25284 O25284]
−
{{#set: reconstruction category=orthology|annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
** [http://www.uniprot.org/uniprot/O34340 O34340]
 +
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 +
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 +
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 +
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 +
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
</div>
 +
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.179|ec-2.3.1.86|ec-2.3.1.41}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=beta-ketoacyl-acp synthase ii}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=plantarum|bifidobacterium|ecoli|genome|faecalibacterium|bthetaiotaomicron}}
+
{{#set: reconstruction source=genome}}

Revision as of 10:14, 10 September 2020

Reaction 3-OXOACYL-ACP-SYNTH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FASYN-ELONG-PWY, fatty acid elongation -- saturated:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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