Difference between revisions of "FISUC RS12770"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:reaction == Reaction ExchangeSeed-FMN == * direction: ** reversible == Reaction formula == * 1.0 FMN[C-BOUNDARY] '''<=>''' 1.0 FMN[e] == Gene(s) associate...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction DTDPKIN-RXN ==
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== Reaction ExchangeSeed-FMN ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** nucleoside-diphosphate kinase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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* 1.0 [[FMN]][C-BOUNDARY] '''<=>''' 1.0 [[FMN]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS14500]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS12530]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS15240]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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{{#set: reconstruction category=manual}}
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{{#set: ec-number=ec-2.7.4.6}}
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{{#set: reconstruction tool=curation}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: common-name=nucleoside-diphosphate kinase}}
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{{#set: reconstruction source=import_from_medium}}
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=7}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}}
 

Revision as of 10:14, 10 September 2020

Reaction ExchangeSeed-FMN

  • direction:
    • reversible

Reaction formula

  • 1.0 FMN[C-BOUNDARY] <=> 1.0 FMN[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12770&oldid=23797"