Difference between revisions of "FSU RS13520"

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(Created page with "Category:reaction == Reaction ExchangeSeed-MG+2 == * direction: ** reversible == Reaction formula == * 1.0 MG+2[C-BOUNDARY] '''<=>''' 1.0 MG+2[e] == Gene(s) associ...")
(Created page with "Category:reaction == Reaction FARNESYLTRANSTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29] * direction: ** left-to-right == Reaction...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-MG+2 ==
+
== Reaction FARNESYLTRANSTRANSFERASE-RXN ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[MG+2]][C-BOUNDARY] '''<=>''' 1.0 [[MG+2]][e]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS10165]]
 +
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* Gene: [[FSU_RS06175]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7720]], ophiobolin F biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis:
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7492]], paspaline biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6691]], plaunotol biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7517]], brassicicene C biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6659]], fusicoccin A biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=manual}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
−
{{#set: reconstruction tool=curation}}
+
* UNIPROT:
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
** [http://www.uniprot.org/uniprot/P39464 P39464]
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/P24322 P24322]
 +
** [http://www.uniprot.org/uniprot/P80042 P80042]
 +
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
 +
** [http://www.uniprot.org/uniprot/P95999 P95999]
 +
** [http://www.uniprot.org/uniprot/P48368 P48368]
 +
** [http://www.uniprot.org/uniprot/P93227 P93227]
 +
** [http://www.uniprot.org/uniprot/P93228 P93228]
 +
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
 +
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 +
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 +
** [http://www.uniprot.org/uniprot/P54976 P54976]
 +
{{#set: ec-number=ec-2.5.1.29}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=8}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=orthofinder}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=bthetaiotaomicron}}

Revision as of 17:52, 22 September 2020

Reaction FARNESYLTRANSTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7720, ophiobolin F biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7492, paspaline biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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