Difference between revisions of "FSU RS04640"

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(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] * direction: ** reversible * common-name: ** diaminopi...")
(Created page with "Category:reaction == Reaction SUCCDIAMINOPIMDESUCC-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.18 ec-3.5.1.18] * direction: ** left-to-right == Reaction form...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMEPIM-RXN ==
+
== Reaction SUCCDIAMINOPIMDESUCC-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
+
** [http://enzyme.expasy.org/EC/3.5.1.18 ec-3.5.1.18]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** diaminopimelate epimerase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
+
* 1 [[N-SUCCINYLLL-2-6-DIAMINOPIMELATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[LL-DIAMINOPIMELATE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS10985]]
+
* Gene: [[FSU_RS02420]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS09045]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02734 R02734]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
+
** [http://www.uniprot.org/uniprot/P0AED7 P0AED7]
−
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
+
** [http://www.uniprot.org/uniprot/Q57899 Q57899]
−
** [http://www.uniprot.org/uniprot/P44859 P44859]
+
** [http://www.uniprot.org/uniprot/Q9JTL0 Q9JTL0]
−
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
+
** [http://www.uniprot.org/uniprot/Q9PNP3 Q9PNP3]
−
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
+
** [http://www.uniprot.org/uniprot/P44514 P44514]
−
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
+
** [http://www.uniprot.org/uniprot/Q59284 Q59284]
−
** [http://www.uniprot.org/uniprot/P46814 P46814]
+
{{#set: ec-number=ec-3.5.1.18}}
−
** [http://www.uniprot.org/uniprot/O05322 O05322]
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-5.1.1.7}}
+
{{#set: nb gene associated=1}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=1}}
−
{{#set: common-name=diaminopimelate epimerase}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}
+
{{#set: reconstruction source=faecalibacterium}}

Revision as of 17:53, 22 September 2020

Reaction SUCCDIAMINOPIMDESUCC-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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