Difference between revisions of "FSU RS15260"

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(Created page with "Category:reaction == Reaction RXN0-6482 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.56 ec-2.7.7.56] * direction: ** left-to-right * common-name: ** ribonuclease...")
(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-6482 ==
+
== Reaction LUMAZINESYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.56 ec-2.7.7.56]
+
** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ribonuclease ph
+
** 6,7-dimethyl-8-ribityllumazine synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD0-2353]][c] '''+''' n [[Pi]][c] '''=>''' n [[Ribonucleoside-Diphosphates]][c] '''+''' 1 [[tRNAs]][c]
+
* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS05020]]
+
* Gene: [[FSU_RS15715]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS13750]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS03130]]
+
* Gene: [[FSU_RS15725]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1479]], tRNA processing:
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
** '''5''' reactions found over '''10''' reactions in the full pathway
 
** '''5''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.7.7.56}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
 +
{{#set: ec-number=ec-2.5.1.78}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonuclease ph}}
+
{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=ecoli|genome|bthetaiotaomicron}}

Revision as of 17:56, 22 September 2020

Reaction LUMAZINESYN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 6,7-dimethyl-8-ribityllumazine synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea):
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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