Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPKIN-RXN ==
+
== Reaction ACONITATEDEHYDR-RXN ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nucleoside-diphosphate kinase
+
** aconitate hydratase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
+
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS14500]]
+
* Gene: [[FISUC_RS00920]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FSU_RS02800]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS12530]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS15240]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
+
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16276 P16276]
 +
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 +
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 +
** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
−
{{#set: ec-number=ec-2.7.4.6}}
+
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=nucleoside-diphosphate kinase}}
+
{{#set: common-name=aconitate hydratase}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=15}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=ecoli|bifidobacterium|genome|bthetaiotaomicron}}

Revision as of 17:57, 22 September 2020

Reaction ACONITATEDEHYDR-RXN

  • direction:
    • reversible
  • common-name:
    • aconitate hydratase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 8 reactions found over 12 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 9 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 14 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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