Difference between revisions of "FSU RS07260"

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(Created page with "Category:reaction == Reaction RXN-9652 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [http...")
(Created page with "Category:reaction == Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27] * direction: ** reversible == Reaction...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-9652 ==
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== Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TRP]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[INDOLE_PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01270]]
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* Gene: [[FSU_RS14145]]
−
** Category: [[manual]]
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** Category: [[orthology]]
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
+
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS01255]]
 
−
** Category: [[manual]]
 
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 
−
* Gene: [[FSU_RS01605]]
 
−
** Category: [[manual]]
 
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
+
* [[TRPIAACAT-PWY]], indole-3-acetate biosynthesis VI (bacteria):
−
** '''20''' reactions found over '''31''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-581]], indole-3-acetate biosynthesis II:
 +
** '''2''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-8017]], L-tryptophan degradation XIII (Stickland reaction):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5081]], L-tryptophan degradation VIII (to tryptophol):
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[TRPKYNCAT-PWY]], L-tryptophan degradation IV (via indole-3-lactate):
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.41}}
+
* RHEA:
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14096 14096]
−
{{#set: nb gene associated=3}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00684 R00684]
−
{{#set: reconstruction category=manual}}
+
{{#set: ec-number=ec-2.6.1.27}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction source=reactions_add_147_emile_annot}}
+
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=orthofinder}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=plantarum}}

Revision as of 17:57, 22 September 2020

Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRPIAACAT-PWY, indole-3-acetate biosynthesis VI (bacteria):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II:
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-8017, L-tryptophan degradation XIII (Stickland reaction):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5081, L-tryptophan degradation VIII (to tryptophol):
    • 2 reactions found over 4 reactions in the full pathway
  • TRPKYNCAT-PWY, L-tryptophan degradation IV (via indole-3-lactate):
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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