Difference between revisions of "FSU RS13255"

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(Created page with "Category:reaction == Reaction ERYTH4PDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.72 ec-1.2.1.72] * direction: ** left-to-right == Reaction formula =...")
 
(Created page with "Category:reaction == Reaction AMINOBUTDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.19 ec-1.2.1.19] * direction: ** left-to-right == Reaction formula...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction ERYTH4PDEHYDROG-RXN ==
+
== Reaction AMINOBUTDEHYDROG-RXN ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.1.72 ec-1.2.1.72]
+
** [http://enzyme.expasy.org/EC/1.2.1.19 ec-1.2.1.19]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ERYTHRONATE-4P]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[4-AMINO-BUTYRALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[4-AMINO-BUTYRATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS02400]]
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* Gene: [[FSU_RS01755]]
** Category: [[orthology]]
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** Category: [[manual]]
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[reactions_add_43_emile_ortho_meta]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the orthology part of the emile network.
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
+
* [[PWY-3]], putrescine degradation V:
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PUTDEG-PWY]], putrescine degradation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-2]], putrescine degradation IV:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_43_emile_ortho_meta]]; tool: [[curation]]; comment: present in the orthology part of the emile network.
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12057 12057]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19106 19106]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01825 R01825]
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** [http://www.genome.jp/dbget-bin/www_bget?R02549 R02549]
{{#set: ec-number=ec-1.2.1.72}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P49189 P49189]
 +
{{#set: ec-number=ec-1.2.1.19}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=present in the orthology part of the emile network.}}
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron}}
+
{{#set: reconstruction source=reactions_add_43_emile_ortho_meta}}

Revision as of 17:57, 22 September 2020

Reaction AMINOBUTDEHYDROG-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3, putrescine degradation V:
    • 1 reactions found over 2 reactions in the full pathway
  • PUTDEG-PWY, putrescine degradation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-2, putrescine degradation IV:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links