Difference between revisions of "CITSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN0-6427 == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2] * direction: ** left-to-right == Reaction formula == * 1 GDP-...")
(Created page with "Category:reaction == Reaction RXN-16629 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] * dir...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-6427 ==
+
== Reaction RXN-16629 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** beta-ketoacyl-acp synthase ii
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-TP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GTP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[Oleoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[11Z-3-oxo-icos-11-enoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS13775]]
+
* Gene: [[FISUC_RS15410]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS15210]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01605]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01400]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PPGPPMET-PWY]], ppGpp biosynthesis:
+
* [[PWY-7663]], gondoate biosynthesis (anaerobic):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33056 33056]
 
−
{{#set: ec-number=ec-3.1.7.2}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=beta-ketoacyl-acp synthase ii}}
 +
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 07:12, 24 September 2020

Reaction RXN-16629

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7663, gondoate biosynthesis (anaerobic):
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=CITSYN-RXN&oldid=33101"